Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0966 ATGGATAATGGAACTTCTAATAGTTCAACACAATCTGCAGTCAACAATTCAGCTCCAACTGTCCAAAGGCAAAATAGTAAAGGAGACCATTTGACATCTATTTTATCTCCGTCTGGAATCTCATCTTGGGCTAAGAGTTTTAGAAATCCACAACCACCTGAAGCAGCAGAAGATGATTCCAAGGCAGGAAATGCTGGGATGTCAGCAATTGCTCGTTTCAGTAGTGGCTTTGGATTGCGGATACCTTCAATGTCTCCTGTACGAAATGATGGTGTAGCAGATACCACATCAGCAACACAATCTGGTGTTTTCGAATCATTCACAAAAGGTTTAGTTGACACATCTCAGAATGCAGTAAAGGCTATGCAGGTAAAGGCACGCCATATTGTCTCCCAAAACAAACGAAGATATCAGGAAGGAGAATTTGATTTGGATATGACATATATCACTGAAAATATAATTGCTATGGGGTTTCCTGCTGGTCACATGAGCTCTGGTTTTTTTGGATTCCTTGAGGGATTTTATAGAAATCATATGGAAGAAGTGATCAAGTTTTTTGAAACTCATCATAAGGGAAAATACAAAGTTTACAATCTTTGCTCAGAGCGTTTGTATGACGCCTCATTATTTGAGGGGAAGGTTGCACATTTCCCGTTTGATGATCATAATTGTCCTCCTATCCATCTCATAAAATTATTTTGTCAAAGTGCATATGCATGGTTAAAGGAGGATATCGAGAATGTGGTTGTTGTTCATTGTAAAGCTGGTATGGCAAGAACAGGGCTAATGATTTGCAGCCTCCTTTTATTCCTAAAGTTCTTCCAAACATCAGCAGAGGCAATCGACTATTATAATCAGAAAAGATGCGTGGATGGAAAGGCTTTGGTTCTTCCTAGCCAGATTAGATATGTCAAGTATTTTGAGCGCATTCTAACACATTTCAACGGAAATACTCCTCCTGGACGGAGGTGCATGCTGAGAGGTTTCCGGCTTCACAAGTGCCCGTATTGGGTCAGGCCTTCCATTACAATATCAAATCACAGTGGTACTTTTGGAAATTTCCGCTGTTTTCCTTATATTATAAATCTTCTTTTTACAAAGATTTTATTCTCAACAAGAAAGCATCCAAAGACAAAGGATTTAATGGTAGCGTTCTTGAAGTTCAACCCTTTGCCAGAAGATTTCTGGATTAGGGCGCCAAAGAAAGGATTTGTGGTCTTTGCACTGCCAGGTGAGCCTGGTTTAACAGAGTTGTCTGGGGACTTCAAGATTCATTTTCATGACCGGCATGGAGATTTTTACTGCTGGCTAAATACAACAATGACAGAAAACAAAGTTTTATTGAGTGACACAGATCTTGATGGCTTTGACAAGAGAAAACTCCCTACTCCTGGATTCCAGGTTGAAGTTGTGATGATTGACTATGATGGTACTTTGCCAACACGATTGAAAACTAATTCTGCTGGCAAAGGATCTGATCGTCGCTCTATTCACGATCGGGCATCAGGTCATGAAGCCCAATCTAGCAAAAATAAAATTCCCGAGGTTGAAGAAAATGATGACAATGTATTCTCTGATAGTGATGAAGAAAATAGTGACCCGAAGACCAGTCTAACTCAATCAACTTCTGGAACTGGAACTGCAAAAGCTGACCATTCATCAACAGCAATTGCTTCTGAAAAAATTGGAAGTTTAGCGCATGAAACTAGTCATTTGTCACTCGGGAATGAAAAAAACACACAAACTAATGCTCCAAAAGAACCAAACTTTGATAGCGTGATACAATCGTCAAGCCTTGAGACCCCGAATTTGGATTCAGTAAGGGCAAGTGACTTCAAGGCAATAGCAGCTGATGCGTCAGTTTTCACTTTTGGGGATGAAGAAGACTTTGATAGTGAATGA 1902 39.96 MDNGTSNSSTQSAVNNSAPTVQRQNSKGDHLTSILSPSGISSWAKSFRNPQPPEAAEDDSKAGNAGMSAIARFSSGFGLRIPSMSPVRNDGVADTTSATQSGVFESFTKGLVDTSQNAVKAMQVKARHIVSQNKRRYQEGEFDLDMTYITENIIAMGFPAGHMSSGFFGFLEGFYRNHMEEVIKFFETHHKGKYKVYNLCSERLYDASLFEGKVAHFPFDDHNCPPIHLIKLFCQSAYAWLKEDIENVVVVHCKAGMARTGLMICSLLLFLKFFQTSAEAIDYYNQKRCVDGKALVLPSQIRYVKYFERILTHFNGNTPPGRRCMLRGFRLHKCPYWVRPSITISNHSGTFGNFRCFPYIINLLFTKILFSTRKHPKTKDLMVAFLKFNPLPEDFWIRAPKKGFVVFALPGEPGLTELSGDFKIHFHDRHGDFYCWLNTTMTENKVLLSDTDLDGFDKRKLPTPGFQVEVVMIDYDGTLPTRLKTNSAGKGSDRRSIHDRASGHEAQSSKNKIPEVEENDDNVFSDSDEENSDPKTSLTQSTSGTGTAKADHSSTAIASEKIGSLAHETSHLSLGNEKNTQTNAPKEPNFDSVIQSSSLETPNLDSVRASDFKAIAADASVFTFGDEEDFDSE 633
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8477718 8483235 - Maker00013465 Lcy1g0966 622878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0966 633 PANTHER PHOSPHATASE WITH HOMOLOGY TO TENSIN 122 561 IPR051281 GO:0005829(PANTHER)|GO:0016311(PANTHER)|GO:0016314(PANTHER)
Lcy1g0966 633 ProSiteProfiles C2 tensin-type domain profile. 321 475 IPR014020 -
Lcy1g0966 633 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 315 IPR029021 -
Lcy1g0966 633 MobiDBLite consensus disorder prediction 534 560 - -
Lcy1g0966 633 MobiDBLite consensus disorder prediction 1 48 - -
Lcy1g0966 633 MobiDBLite consensus disorder prediction 482 594 - -
Lcy1g0966 633 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 249 288 IPR000387 GO:0016311(InterPro)
Lcy1g0966 633 Pfam PTEN2, C2 domain 321 476 - -
Lcy1g0966 633 MobiDBLite consensus disorder prediction 569 594 - -
Lcy1g0966 633 Gene3D Protein tyrosine phosphatase superfamily 120 317 IPR029021 -
Lcy1g0966 633 CDD PTP_PTEN 145 310 IPR045101 GO:0016791(InterPro)
Lcy1g0966 633 ProSiteProfiles Phosphatase tensin-type domain profile. 135 314 IPR029023 -
Lcy1g0966 633 FunFam Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 120 317 - -
Lcy1g0966 633 ProSitePatterns Tyrosine specific protein phosphatases active site. 251 261 IPR016130 GO:0016311(InterPro)
Lcy1g0966 633 MobiDBLite consensus disorder prediction 488 519 - -
Lcy1g0966 633 Pfam Polymorphic toxin system, DSP-PTPase phosphatase 214 269 - -
Lcy1g0966 633 SMART PTEN_C2_2 319 474 IPR014020 -
Lcy1g0966 633 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g0634 Lcy-Chr10:18124880 Lcy1g0966 Lcy-Chr1:8477718 5.30E-46 dispersed
Lcy1g0966 Lcy-Chr1:8477718 Lcy4g0225 Lcy-Chr4:2789604 9.40E-238 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0966 K01110 - csv:101213277 1059.67