Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0971 ATGGCCGTGGAGCTCCTGCCCCACGCCCATCCACTCTCCTCCACCCACAACATGGAAGCCAACGCCGTTCAAGAAGCCGCCTCCGGCCTCGAAAGCGTCGAGAAGCTCATCCGATTGCTCTCCAATGCCCACCAACAACACCACTCCTTGCCTTCTATTCAATCCCCCAATTCCAATTCCAATTCCGCTCTCGATTTCCCCACCGACTGCCGCGCCGCCGCCGATGCAGCCGTCTCCAAGTTCAAGAAGGTCATTTCTCTCCTCGGCCGGAGCCGGGTCGGCCATGCCCGCTTCCGAAGAGCTCCTCTCCCTCTCCCCCAAACCCCCCAAGTCCACTACGCCACTCCGATCCAGCAGATCCCGCCCCATCGCCACCACCCCCCCGGCGACCTCGATAAGAAGGAGCCTCTGACCACCAGCGTTAATTTCTCCTATTCCTCCGCCCATAACTCCTTCATCTCGTCGTTGACCGGCGACGGCGACAGCAAGCAGCCTTCCTCCTCCTCCGCCTTTCAGATTACCAACCTCTCCCAGGTCTCCTCCGCCGGAAAACCCCCTCTCTCTACTTCTTCCCTCAAGAGGAAGTGTAGCTCCGATAACTTGGGATCCGGCAAGTGCGGCGCTGCTTCTTCCTCCGGCCGATGCCACTGTTCCAAGAAGAGAAAACTAAGAGTGAAGAGGGTGGTGAGAGTTCCGGCGATCAGCTTGAAAATGGCGGATATCCCACCGGACGATTACTCATGGAGAAAATATGGTCAAAAGCCAATTAAAGGCTCTCCACATCCCAGGGGATATTACAAGTGTAGCAGCGTGAGAGGATGCCCAGCCCGGAAACACGTAGAACGGGCCGTAGACGATCCGGCGATGCTAGTGGTGACCTACGAAGGAGAACACAATCACACCCTCAGTGTACCCGAAACCTCCAATCTCATCCTCGAGTCCTCGTAG 948 57.49 MAVELLPHAHPLSSTHNMEANAVQEAASGLESVEKLIRLLSNAHQQHHSLPSIQSPNSNSNSALDFPTDCRAAADAAVSKFKKVISLLGRSRVGHARFRRAPLPLPQTPQVHYATPIQQIPPHRHHPPGDLDKKEPLTTSVNFSYSSAHNSFISSLTGDGDSKQPSSSSAFQITNLSQVSSAGKPPLSTSSLKRKCSSDNLGSGKCGAASSSGRCHCSKKRKLRVKRVVRVPAISLKMADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSVRGCPARKHVERAVDDPAMLVVTYEGEHNHTLSVPETSNLILESS 315
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8514721 8516411 + Maker00012163 Lcy1g0971 622883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0971 315 MobiDBLite consensus disorder prediction 177 210 - -
Lcy1g0971 315 FunFam WRKY transcription factor 65 226 303 - -
Lcy1g0971 315 Gene3D WRKY domain 225 303 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0971 315 ProSiteProfiles WRKY domain profile. 237 303 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0971 315 SMART WRKY_cls 242 302 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0971 315 MobiDBLite consensus disorder prediction 177 207 - -
Lcy1g0971 315 MobiDBLite consensus disorder prediction 117 137 - -
Lcy1g0971 315 Pfam WRKY DNA -binding domain 244 300 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g0971 315 Pfam Plant zinc cluster domain 193 240 IPR018872 -
Lcy1g0971 315 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 23 304 IPR044810 GO:0003700(InterPro)
Lcy1g0971 315 SUPERFAMILY WRKY DNA-binding domain 239 301 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0971 Lcy-Chr1:8514721 Lcy8g0896 Lcy-Chr8:32266610 9.96E-110 dispersed
Lcy2g0329 Lcy-Chr2:2712649 Lcy1g0971 Lcy-Chr1:8514721 2.40E-64 transposed
Lcy1g0971 Lcy-Chr1:8514721 Lcy9g2076 Lcy-Chr9:45518531 1.13E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19570 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0971 - - - 0.0