Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0973 ATGAACCCCAATCCCTCCACATTTCTCCCGTCCCTTCCACTTCTCTTTTCTTTCTTCGCTTTTGCCGCCTCTGGATTTGCCTTTCAAATTCCGCCGCCGGCGCTTGTCCCACCGGAAGACTTGCTGTTGCCGTCCGACGCCGTCGCTCTTCTTTCGTTCAAGTCTAAAGCCGACTTGGACAACAAGCTTCTTTACACTCTCAATGAGCGGTTTGATTACTGTCAATGGCAGGGCGTGAAGTGCGTCCAGGGTCGTGTTGTTCGACTGGTTCTTCAGTCGTTTGGTCTCCGTGGGATATTGGCTCCTAACACAGTGTCTAAGCTCGACCAGCTTCGGATCCTCAGCCTGCACAATAACTCGCTCGAGGGACCCATTCCTGACCTATCCGGACTCTTCAATCTTAAATCTCTGTTCCTTGGCCGAAACTCCTTCTTTGGGACTTTTCCGCCGTCGATTCTTACTCTTCACCGGCTTCAGACTCTTGATCTTTCTAATAACAACTTCACCGGTCCGCTTCCGGCGAGGCTTTCCTCGTTGGACCGGCTCATTACGCTCCGGCTCGAATGGAATGGTTTCAATGGAAGTATTCCGCCGTTAAATCAGTCGTTTCTTGAGGTCTTCAATGTCACGGGGAACAACCTAACCGGGCAAATTCCGGTGACTCCCACTCTGTCGCGTTTCAACACGTCATCGTTTTTCTGGAACCCAGATCTCTGTGGCGAGATCGTCAACAAGGCATGCCATTCACCCGCGCCATTCTTTGAAGCTTCCAATGCCACTGCACCATCTATCCCTTCCATCCAAAATGCAGAGTCACAGGACGTAGTTCTCTCTCCAGTCTCTCATGTTAAGCACAAGGAAACCGGTATGATTTTGGGGCTTTCAGTCGGGGCCGCAGTTTTAGTTGCAGGTCTTTTATGTTTCTACGTAGCAGCCAGAACCCAAAGAAGACAAACTGTATCGAAGCCAGCAATGGCGCAGTTTGAACCCGAAATTGCTTATTCCACAGCTTCCGCAATCGACGAGCGAGTCGAAGGAAAGGGCGAATTTCAAGCGAAATTGAAAGAAATTGAAGAAATTCCAAAAGCCCAGAAAAGTGGTAATCTTATATTTTGTGAAGGAGAGGCAGAGTTATTCAGCTTAGAGCAGTTGATGAGGGCTTCGGCCGAGCTGCTCGGTAGAGGCACAATGGGAACTACGTACAAGGCAGTGCTCTGCAACCAGCTAATCGTAACGGTGAAGCGTCTTGATGCTACTAAGACCGCCGTGACGAGCAGCGAAGTGTTCGACCGGCATTTGGCCGCAGTGGGTGCGCTTCGTCATCCCAATTTGGTGCCAGTTAGGGCCTACTTTCAAGCCAGGGGAGAGAGATTAGTGGTCTACGATTACCAACCTAACGGCAGTCTTTACAACCTCATTCACGATCTCTGTCTGCCATTGGATGAGTCGGTGATGCTGGTTCTGCCAAACTGTTGCAGCAACAGCTCTGGTTTTTTTAATAATGGCCTTCCCGGCTGTATGTGCGATTTTGCCAATGCTTTCAATGACGCCAAAGAATGGACCAAATCCTTGCCTGGCTGTTCAAGATCAGCAAGGGCCAAGCCTCTGCACTGGACATCATGCTTGAAGATTGCCGAAGATTTAGCTCAGGGCATTGCTTATATACATCAAGCTTCTAAGTTAATCCATGGCAACTTGAAGTCTACTAATGTTCTCCTCGGAGCAGACTTTGAGGCTTGTCTCACAGACTATGGCCTTTCCGTTCTGGCAGAGTCCCCTGAAGATCCAGATTCTTCACGCTACCAAGCTCCTGAAACTCGCAAGTCCAGCCGCAACGCCACCCACAAGAGCGATGTCTATGCCTTTGGCGTGCTCTTGCTGGAGCTTTTGACAGGAAGACATCCTTCACATCATCCATTTCTTGAGCCAACTGATATGCCAGAATGGGTAAGGGCAGTTAGGGAAGATGATGGTGGGGATAGTAACCAACTTGGAATGCTTACTGAGGTGGCTAGCATCTGTAGTACTACATCCCCTGAACAGAGGCCCCCCATGTGGCAAGTTTTGAAAATGATACTGGAGATTAAAGAGAGTGTAATGATAGAGGAGTGA 2112 49.43 MNPNPSTFLPSLPLLFSFFAFAASGFAFQIPPPALVPPEDLLLPSDAVALLSFKSKADLDNKLLYTLNERFDYCQWQGVKCVQGRVVRLVLQSFGLRGILAPNTVSKLDQLRILSLHNNSLEGPIPDLSGLFNLKSLFLGRNSFFGTFPPSILTLHRLQTLDLSNNNFTGPLPARLSSLDRLITLRLEWNGFNGSIPPLNQSFLEVFNVTGNNLTGQIPVTPTLSRFNTSSFFWNPDLCGEIVNKACHSPAPFFEASNATAPSIPSIQNAESQDVVLSPVSHVKHKETGMILGLSVGAAVLVAGLLCFYVAARTQRRQTVSKPAMAQFEPEIAYSTASAIDERVEGKGEFQAKLKEIEEIPKAQKSGNLIFCEGEAELFSLEQLMRASAELLGRGTMGTTYKAVLCNQLIVTVKRLDATKTAVTSSEVFDRHLAAVGALRHPNLVPVRAYFQARGERLVVYDYQPNGSLYNLIHDLCLPLDESVMLVLPNCCSNSSGFFNNGLPGCMCDFANAFNDAKEWTKSLPGCSRSARAKPLHWTSCLKIAEDLAQGIAYIHQASKLIHGNLKSTNVLLGADFEACLTDYGLSVLAESPEDPDSSRYQAPETRKSSRNATHKSDVYAFGVLLLELLTGRHPSHHPFLEPTDMPEWVRAVREDDGGDSNQLGMLTEVASICSTTSPEQRPPMWQVLKMILEIKESVMIEE 703
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8538409 8541241 + Maker00012477 Lcy1g0973 622885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0973 703 Gene3D Transferase(Phosphotransferase) domain 1 522 702 - -
Lcy1g0973 703 SUPERFAMILY Protein kinase-like (PK-like) 390 696 IPR011009 -
Lcy1g0973 703 ProSiteProfiles Leucine-rich repeat profile. 110 132 IPR001611 GO:0005515(InterPro)
Lcy1g0973 703 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 45 697 IPR046959 -
Lcy1g0973 703 Gene3D Ribonuclease Inhibitor 44 201 IPR032675 -
Lcy1g0973 703 ProSiteProfiles Protein kinase domain profile. 386 700 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0973 703 Gene3D Ribonuclease Inhibitor 202 250 IPR032675 -
Lcy1g0973 703 SUPERFAMILY L domain-like 44 240 - -
Lcy1g0973 703 MobiDBLite consensus disorder prediction 598 612 - -
Lcy1g0973 703 MobiDBLite consensus disorder prediction 591 612 - -
Lcy1g0973 703 Pfam Protein tyrosine and serine/threonine kinase 390 690 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0973 703 FunFam Leucine-rich repeat receptor-like protein kinase 157 249 - -
Lcy1g0973 703 Pfam Leucine Rich Repeat 110 127 IPR001611 GO:0005515(InterPro)
Lcy1g0973 703 Pfam Leucine Rich Repeat 157 179 IPR001611 GO:0005515(InterPro)
Lcy1g0973 703 FunFam Probable inactive receptor kinase At5g67200 45 155 - -
Lcy1g0973 703 Gene3D Transferase(Phosphotransferase) domain 1 376 491 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0973 Lcy-Chr1:8538409 Lcy7g1283 Lcy-Chr7:16925236 1.40E-114 dispersed
Lcy1g0973 Lcy-Chr1:8538409 Lcy5g0033 Lcy-Chr5:497499 7.75E-29 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65648 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0973 - - - 0.0