Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0975 ATGGACGGCGGAGGAGAGCCAGTGCGGGACGGCACCAGAAAGAGAGGCGTCGACAATCACAGGCCTTACAAAGGGATAAGGATGAGGAAGTGGGGGAAGTGGGTGGCTGAGATTCGAGAGCCCAATAAGCGCTCCAGGATTTGGCTCGGCTCTTACTCTTCTCCTGTCGCCGCCGCCAGGGCCTACGATACGGCTGTCTTTTACCTCAGAGGCCCCTCCGCCAGGCTTAATTTTCCAGAGTTGTTGGCTGGGGAAGGCCGCGGAATTAGCGCCGGCGGCGGCGGCGGCGGCGGCGTCGACATGTCGGCGGCTTCCATACGGAAGAAAGCGACGGAGGTGGGGGCTCGAGTGGATGCTCTGGAGAGTTCGTTGGGTCATCACCAAAACCAACAACACCAACACAGTCACAACAATCGGAGCCATCACCATCCAAACGCATCGGCGTCTCCGCCAGAGATGAAAGGGTGCAGCGGGTTTTTGGATCGGGTGGATTTGAACAAATTACCCGACCCGGAAGAAGAAGATGAAGAAGCCGATGGGGAGTTCGAGTGGGAGAGACACTGA 564 58.33 MDGGGEPVRDGTRKRGVDNHRPYKGIRMRKWGKWVAEIREPNKRSRIWLGSYSSPVAAARAYDTAVFYLRGPSARLNFPELLAGEGRGISAGGGGGGGVDMSAASIRKKATEVGARVDALESSLGHHQNQQHQHSHNNRSHHHPNASASPPEMKGCSGFLDRVDLNKLPDPEEEDEEADGEFEWERH 187
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8570647 8571210 + Maker00013518 Lcy1g0975 622887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0975 187 CDD AP2 23 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0975 187 MobiDBLite consensus disorder prediction 1 21 - -
Lcy1g0975 187 FunFam Ethylene-responsive transcription factor 2 21 80 - -
Lcy1g0975 187 SMART rav1_2 22 85 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0975 187 Pfam AP2 domain 23 71 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0975 187 Gene3D AP2/ERF domain 22 80 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0975 187 SUPERFAMILY DNA-binding domain 23 80 IPR016177 GO:0003677(InterPro)
Lcy1g0975 187 ProSiteProfiles AP2/ERF domain profile. 22 79 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0975 187 MobiDBLite consensus disorder prediction 122 187 - -
Lcy1g0975 187 PRINTS Ethylene responsive element binding protein signature 61 81 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0975 187 PRINTS Ethylene responsive element binding protein signature 23 34 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0975 187 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR RAP2-1-RELATED 16 178 - -
Lcy1g0975 187 MobiDBLite consensus disorder prediction 6 21 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0975 Lcy-Chr1:8570647 Lcy8g0773 Lcy-Chr8:28362107 4.58E-59 dispersed
Lcy1g0975 Lcy-Chr1:8570647 Lcy13g2098 Lcy-Chr13:39961287 2.60E-46 wgd
Lcy1g0975 Lcy-Chr1:8570647 Lcy5g0043 Lcy-Chr5:584555 2.17E-21 wgd
Lcy1g0975 Lcy-Chr1:8570647 Lcy9g2084 Lcy-Chr9:45577194 4.40E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19571 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0975 K09286 - csv:101214481 244.588