Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0976 ATGTGGGATCTGAACGATTGTCCTGAGGAGAGGGAAGACGAGGAATCGGAAGCGTGTTCGGGAGACGAGAAAGGGAAAAGGGTGGGATCGGTTTCTAATTCCAGTTCCTCCGCCGTGGTTGTGGAGGATGGATCCGATGACGACGACCAACCCAGCCCCAGCCCCAACCATATGGATATGCTCATGCAAATTGACACTACTCCCACCCCCGTCGTCACTCGCCAGTTTTTCCCACTCGACCAACCTCAACTTTCTGCTCCCTTTCCATCTACTACTACCACTTCCGCCTTCCCTCCAGCTCACTGGGTTGGGGTCAAATTTGCCCATCCCGATCCCCTCGCCCCCAATAATTCCATCAAGCCCACCGACCTCTCCCACCCCATTAAGAAGAGCCGCCGCGGACCAAGGTCCCGTAGCTCTCAGTACCGCGGCGTCACTTTCTACCGGAGGACCGGCCGCTGGGAGTCGCATATTTGGGATTGTGGAAAGCAAGTTTATCTCGGTATGTTTGGTCTGATGGGAAATCTAACGAAGGAGGAATTTGTGCATGTACTTCGCCGACAAAGCACTGGGTTTCCCAGAGGAAGCTCCAAGTATAGAGGTGTAACGCTTCACAAGTGTGGAAGATGGGAGGCTCGAATGGGCCAATTTCTTGGCAAAAAGTATGTCTATTTGGGTTTGTTTGATACGGAGATTGAAGCCGCAAGGGCTTATGATAAAGCTGCAATCAAGTGTAATGGCAAAGAAGCTGTCACCAATTTTGATCCCAGCATCTACGACAATGAACTGAATCCGACAACTGATTCAATTGGCAGTTTGGGGGATCACAGTCTTGATTTGAGTTTGGGAAATTCAAGCTCAAAGCAAAACGACAGCCCAAATGCCTCCATAGATCCACACCATTCTTCTTCAGCTTCTCTATCCATGGAACCTGACTGGCAACGCAATCAAGGATTTAGGCCTCCTCAGCTAAATTTGCTGCAAGAGTCAAGTGGAGGAGGAGGAGGAGGTGAAAACAAAAATTACAATAATGCACTTGCACAGAGAAGAAATAGTAGGTACCTGGAGAGTGAAACCATGCAGCTGCTGAGCCAAACGCACATTCAATCTCCAGCTTCGTTTGAAATGCAAAGACACGGGCAATTCAGCCGGGCGGCGGCTGGTGGAGATCAGCCCCACTCTCAAATATTGCTTCAGAATCAACACCCAAGCCTCAATTATCAAATTCAGTTTTCGAGCAGCAGTAATGGAAGCCGAATAGGAAGTGATCTATCACTGTCTCTAAGTGATCATAATCAACTTCTTCAATCGGGGCCATCTCAAGTTCTTGCAACTGCTGCAGCATCATCAGGATTCGCACCCCAGATTAGACCTTCCAAAAATTGGCTGCAGAAGAATGGGTTTCACTGTCTCATGAGACCCTCCTGA 1428 49.16 MWDLNDCPEEREDEESEACSGDEKGKRVGSVSNSSSSAVVVEDGSDDDDQPSPSPNHMDMLMQIDTTPTPVVTRQFFPLDQPQLSAPFPSTTTTSAFPPAHWVGVKFAHPDPLAPNNSIKPTDLSHPIKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGMFGLMGNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYDNELNPTTDSIGSLGDHSLDLSLGNSSSKQNDSPNASIDPHHSSSASLSMEPDWQRNQGFRPPQLNLLQESSGGGGGGENKNYNNALAQRRNSRYLESETMQLLSQTHIQSPASFEMQRHGQFSRAAAGGDQPHSQILLQNQHPSLNYQIQFSSSSNGSRIGSDLSLSLSDHNQLLQSGPSQVLATAAASSGFAPQIRPSKNWLQKNGFHCLMRPS 475
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8598829 8601980 + Maker00013504 Lcy1g0976 622888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0976 475 MobiDBLite consensus disorder prediction 280 343 - -
Lcy1g0976 475 MobiDBLite consensus disorder prediction 27 41 - -
Lcy1g0976 475 MobiDBLite consensus disorder prediction 1 61 - -
Lcy1g0976 475 PRINTS Ethylene responsive element binding protein signature 199 210 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 PRINTS Ethylene responsive element binding protein signature 237 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 Pfam AP2 domain 197 247 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 CDD AP2 197 257 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 FunFam AP2-like ethylene-responsive transcription factor 197 257 - -
Lcy1g0976 475 MobiDBLite consensus disorder prediction 110 141 - -
Lcy1g0976 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 33 169 - -
Lcy1g0976 475 SMART rav1_2 141 188 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 SMART rav1_2 198 261 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 Gene3D AP2/ERF domain 197 256 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 Gene3D AP2/ERF domain 140 173 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lcy1g0976 475 SUPERFAMILY DNA-binding domain 197 257 IPR016177 GO:0003677(InterPro)
Lcy1g0976 475 ProSiteProfiles AP2/ERF domain profile. 198 255 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0976 Lcy-Chr1:8598829 Lcy5g0256 Lcy-Chr5:2409648 2.46E-72 dispersed
Lcy1g0976 Lcy-Chr1:8598829 Lcy8g0777 Lcy-Chr8:28496511 4.65E-128 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19572 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0976 K09284 - csv:101214724 570.081