Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0978 ATGGGTGATTCAAATGGTCAGCCCCAAGTTAATGAACATGGGCAAAGCGGGCATAAGTCTCTCTTACAGAGCGATGCTCTTTATCAATACATACTTCGAACCAGCGTATATCCCAGAGAGCCCGAAGCTCTGAAAGAACTCCGAGAATTAACCGCCAAACACCCATGGAACGTCATGACAACGAGTGCAGATGAAGCGCAGCTGCTCAGCATGCTTCTTAAGCTCATGAACGCCAAGAACACGATGGAGATTGGCGTTTTCACTGGCTACTCTCTGCTTGCAACTGCTCTCTCCCTTCCCCATGATGGCAAGATATTGGCTATGGATACCAATCGTGAAAACTACGAACTGGGTCTCCCTATAATTCAAAAGGCCGGAGTTGCTCGTAAGATTGATTTCAAAGAAGGCCCTGCCATGACCGTTCTCGACCAAATGATCCAACAGGGAACATATCACGGGACGTTTGACTTTATCTTTGTGGATGCTGACAAGGATAATTACTTGAATTACCACAAGAGGGCTATTGATCTTGTGAAGATTGGTGGCTTGATCGGGTATGACAACACTCTGTGGGCGGGGTCTGTGGCGGCGCCGCCCGATGCCCCTCTTAAAGAGTACATCAAGTATTCCAGAGACTTTCTCTTGGAGTTCAACGAAGCATTGGCGGCTGATTGTAGGATTGAGATTTGCCAACTTGCAGTGGGAGATGGGATTACTTTGTGTCGTCGTGTCAGTTGA 738 47.7 MGDSNGQPQVNEHGQSGHKSLLQSDALYQYILRTSVYPREPEALKELRELTAKHPWNVMTTSADEAQLLSMLLKLMNAKNTMEIGVFTGYSLLATALSLPHDGKILAMDTNRENYELGLPIIQKAGVARKIDFKEGPAMTVLDQMIQQGTYHGTFDFIFVDADKDNYLNYHKRAIDLVKIGGLIGYDNTLWAGSVAAPPDAPLKEYIKYSRDFLLEFNEALAADCRIEICQLAVGDGITLCRRVS 245
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8628969 8630544 - Maker00012195 Lcy1g0978 622890
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0978 245 CDD AdoMet_MTases 86 184 - -
Lcy1g0978 245 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 24 243 IPR029063 -
Lcy1g0978 245 Gene3D Vaccinia Virus protein VP39 19 245 IPR029063 -
Lcy1g0978 245 PANTHER O-METHYLTRANSFERASE-RELATED 16 244 IPR050362 GO:0008757(PANTHER)
Lcy1g0978 245 Pfam O-methyltransferase 34 244 IPR002935 GO:0008171(InterPro)
Lcy1g0978 245 ProSiteProfiles SAM-dependent O-methyltransferase class I-type profile. 20 244 IPR002935 GO:0008171(InterPro)
Lcy1g0978 245 FunFam Caffeoyl-CoA O-methyltransferase 1 13 245 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g0978 Lcy-Chr1:8628969 Lcy3g1119 Lcy-Chr3:36171050 1.89E-139 dispersed
Lcy1g0978 Lcy-Chr1:8628969 Lcy6g0512 Lcy-Chr6:4789456 4.69E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0978 K00588 - vvi:100243978 405.601