Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0979 | ATGGACCATTCCATTTCCAACAAGTGCGATCAAAATGCATGTACTTCTTCAACGTGGACTCCCCCCGCCGCCGCCGCCGCCGTCTCCTCCCCTCCAGACGAAATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCGCTACTCCCCACTCCTCTCTCCTCTCTTCCTCTCCCTCCATCTTCTCCGAACTCACCTGCAACATTAGAGCCTTCACCCCCCTGTCTCATAACATTCCCCCTTCTTATGGGCCGCCTAATGCAGTACCCGACGAGATCTCTGCCGTCGATTCTTCGGAACAATTTGCAAATTCCTCGTCATCCAGTGTACTGTATGATCCGTTGCGCTCTTGTCCCACGCCCACTGCTCCTAATGCGTCTTCTACGTCGGTTGGAGCCAATGATCACAACGAAAACGATGAGTTCGACTGCGAAAGTGAGGAGGGTCTGGAGCCATTGGTTGAAGACCAGCCTACAAAGCCTAATCCTCGCAGTTCTTCCAAGAGAAGCAGAGCCGCCGAAGTTCATAATCTCTCTGAAAAGAGAAGAAGGAGCAGAATTAATGAGAAAATGAAGGCCCTGCAAAATCTGATCCCCAATTCTAACAAGACAGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGACATGGCTTGAATTTACATCCCATGAACTTACCTGGAAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCACTTCCTTCTGACCGAGAGAGACCAAACCAGATTTTTCTGAGTTTGCCTGACCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGTAGAAACTCCATTTGAATTGGTCCCGCCCGTCCAGGCTCACCTAGTCCCATTTTACTTGAGTGAACCTTCCAAGGAGATTTGCAGAGATGTGCTGCGAGATCCCCAAGTGAATGTGAGCCAATTGGAGACGACTCCCTTCGTTGCAGTGTCACGCTCCTATAACATAGCAGCGCCAGATTTAGAAGAATTACAGAATGGCGTCTCAATAGAACCGTGCATCATTCAAGGAAATCGGTCAGGTGTGCTTCTAAACACTCCAGAGCACAGCCTTTTGAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA | 1215 | 48.31 | MDHSISNKCDQNACTSSTWTPPAAAAAVSSPPDEISLFLQQILLRSSSATPHSSLLSSSPSIFSELTCNIRAFTPLSHNIPPSYGPPNAVPDEISAVDSSEQFANSSSSSVLYDPLRSCPTPTAPNASSTSVGANDHNENDEFDCESEEGLEPLVEDQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRHGLNLHPMNLPGSLQYLQLSHMRMDFGEENRSLPSDRERPNQIFLSLPDQKAASIHPFMSDIGRTNVETPFELVPPVQAHLVPFYLSEPSKEICRDVLRDPQVNVSQLETTPFVAVSRSYNIAAPDLEELQNGVSIEPCIIQGNRSGVLLNTPEHSLLNGIDTGRPTETTELQ | 404 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8639937 | 8642339 | + | Maker00012954 | Lcy1g0979 | 622891 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0979 | 404 | Coils | Coil | 211 | 231 | - | - | |
Lcy1g0979 | 404 | MobiDBLite | consensus disorder prediction | 81 | 187 | - | - | |
Lcy1g0979 | 404 | MobiDBLite | consensus disorder prediction | 168 | 187 | - | - | |
Lcy1g0979 | 404 | CDD | bHLH_AtPIF_like | 172 | 234 | IPR047265 | - | |
Lcy1g0979 | 404 | SMART | finulus | 178 | 227 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g0979 | 404 | MobiDBLite | consensus disorder prediction | 98 | 136 | - | - | |
Lcy1g0979 | 404 | Pfam | Helix-loop-helix DNA-binding domain | 175 | 222 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g0979 | 404 | PANTHER | TRANSCRIPTION FACTOR PIF1-RELATED | 32 | 320 | IPR031066 | GO:0005634(PANTHER) | |
Lcy1g0979 | 404 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 169 | 232 | IPR036638 | GO:0046983(InterPro) | |
Lcy1g0979 | 404 | Gene3D | - | 167 | 232 | IPR036638 | GO:0046983(InterPro) | |
Lcy1g0979 | 404 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 172 | 221 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g0979 | 404 | FunFam | Basic helix-loop-helix transcription factor | 167 | 230 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g2092 | Lcy-Chr13:39899103 | Lcy1g0979 | Lcy-Chr1:8639937 | 1.25E-41 | dispersed | |
Lcy1g0979 | Lcy-Chr1:8639937 | Lcy3g1415 | Lcy-Chr3:40829177 | 1.51E-27 | dispersed | |
Lcy1g0979 | Lcy-Chr1:8639937 | Lcy8g0681 | Lcy-Chr8:24954688 | 5.38E-08 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19573 | None | None | None | None | Lcy | TF |
Pathway information
