Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0979 ATGGACCATTCCATTTCCAACAAGTGCGATCAAAATGCATGTACTTCTTCAACGTGGACTCCCCCCGCCGCCGCCGCCGCCGTCTCCTCCCCTCCAGACGAAATCTCTCTGTTTCTGCAACAGATTTTGCTACGTTCCTCTTCCGCTACTCCCCACTCCTCTCTCCTCTCTTCCTCTCCCTCCATCTTCTCCGAACTCACCTGCAACATTAGAGCCTTCACCCCCCTGTCTCATAACATTCCCCCTTCTTATGGGCCGCCTAATGCAGTACCCGACGAGATCTCTGCCGTCGATTCTTCGGAACAATTTGCAAATTCCTCGTCATCCAGTGTACTGTATGATCCGTTGCGCTCTTGTCCCACGCCCACTGCTCCTAATGCGTCTTCTACGTCGGTTGGAGCCAATGATCACAACGAAAACGATGAGTTCGACTGCGAAAGTGAGGAGGGTCTGGAGCCATTGGTTGAAGACCAGCCTACAAAGCCTAATCCTCGCAGTTCTTCCAAGAGAAGCAGAGCCGCCGAAGTTCATAATCTCTCTGAAAAGAGAAGAAGGAGCAGAATTAATGAGAAAATGAAGGCCCTGCAAAATCTGATCCCCAATTCTAACAAGACAGACAAGGCCTCGATGCTGGACGAAGCAATTGAATATCTGAAGCAGCTTCAACTTCAAGTTCAGATGCTGTCGATGAGACATGGCTTGAATTTACATCCCATGAACTTACCTGGAAGTTTGCAATATCTCCAACTTTCCCACATGAGAATGGACTTTGGTGAAGAAAACAGGTCACTTCCTTCTGACCGAGAGAGACCAAACCAGATTTTTCTGAGTTTGCCTGACCAAAAGGCTGCCTCCATCCATCCTTTCATGTCAGACATTGGAAGAACTAATGTAGAAACTCCATTTGAATTGGTCCCGCCCGTCCAGGCTCACCTAGTCCCATTTTACTTGAGTGAACCTTCCAAGGAGATTTGCAGAGATGTGCTGCGAGATCCCCAAGTGAATGTGAGCCAATTGGAGACGACTCCCTTCGTTGCAGTGTCACGCTCCTATAACATAGCAGCGCCAGATTTAGAAGAATTACAGAATGGCGTCTCAATAGAACCGTGCATCATTCAAGGAAATCGGTCAGGTGTGCTTCTAAACACTCCAGAGCACAGCCTTTTGAATGGCATTGACACAGGAAGACCAACTGAAACAACAGAGCTGCAATGA 1215 48.31 MDHSISNKCDQNACTSSTWTPPAAAAAVSSPPDEISLFLQQILLRSSSATPHSSLLSSSPSIFSELTCNIRAFTPLSHNIPPSYGPPNAVPDEISAVDSSEQFANSSSSSVLYDPLRSCPTPTAPNASSTSVGANDHNENDEFDCESEEGLEPLVEDQPTKPNPRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRHGLNLHPMNLPGSLQYLQLSHMRMDFGEENRSLPSDRERPNQIFLSLPDQKAASIHPFMSDIGRTNVETPFELVPPVQAHLVPFYLSEPSKEICRDVLRDPQVNVSQLETTPFVAVSRSYNIAAPDLEELQNGVSIEPCIIQGNRSGVLLNTPEHSLLNGIDTGRPTETTELQ 404
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8639937 8642339 + Maker00012954 Lcy1g0979 622891
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0979 404 Coils Coil 211 231 - -
Lcy1g0979 404 MobiDBLite consensus disorder prediction 81 187 - -
Lcy1g0979 404 MobiDBLite consensus disorder prediction 168 187 - -
Lcy1g0979 404 CDD bHLH_AtPIF_like 172 234 IPR047265 -
Lcy1g0979 404 SMART finulus 178 227 IPR011598 GO:0046983(InterPro)
Lcy1g0979 404 MobiDBLite consensus disorder prediction 98 136 - -
Lcy1g0979 404 Pfam Helix-loop-helix DNA-binding domain 175 222 IPR011598 GO:0046983(InterPro)
Lcy1g0979 404 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 32 320 IPR031066 GO:0005634(PANTHER)
Lcy1g0979 404 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 232 IPR036638 GO:0046983(InterPro)
Lcy1g0979 404 Gene3D - 167 232 IPR036638 GO:0046983(InterPro)
Lcy1g0979 404 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 172 221 IPR011598 GO:0046983(InterPro)
Lcy1g0979 404 FunFam Basic helix-loop-helix transcription factor 167 230 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2092 Lcy-Chr13:39899103 Lcy1g0979 Lcy-Chr1:8639937 1.25E-41 dispersed
Lcy1g0979 Lcy-Chr1:8639937 Lcy3g1415 Lcy-Chr3:40829177 1.51E-27 dispersed
Lcy1g0979 Lcy-Chr1:8639937 Lcy8g0681 Lcy-Chr8:24954688 5.38E-08 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19573 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0979 - - - 0.0