Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g0980 ATGTCTGATCACAAATCAGGCTCCATGACCGACCAGCTCTCCAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCCGCTTTTGTGCTTTTTCTGTTTCTAATTTCTCTTTGGATTGCCTCCAAACGCTCTCGCAGGAAGATTTCTCACAGACCCACAATTCCAATCGTCTCCAAAGAAATCCAGGAGATCAGAATCGATCATGCCCTCGCTCAGAACCATGAACATAAGCCTAGTAGAGCCCATTTTCAGGTCGACCCTCTTCCGGAACCGGAGCCAATCCCCGGAATTGAGCGGCAAGCGCTGCTTTCGTTGCCTCAGGAGGAAGAGCGAGTGAATAGGATTCATATTGAGATAGGGAAGGATCATAGGATTTCATATCCTGAGCGACTTGGTCGGTCGTCTTCCTCACAGGGCAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGGCATTGGTACACTCTCAGGGAGCTCGAAGCTTCGACTAATGGTTTTGCCCCTGATAACGTAATCGGTGAAGGTGGGTATGGAATTGTTTACCATGGCATTTTAGAGGATGGAACTCAGGTTGCTGTTAAGAATTTGCTAAACAACAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAACTTGGTTAGATTGCTCGGATACTGTGCTGAAGGTGCTCATAGGATGCTTGTATATGAGTACATTAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTAGGATCTTTCAGTCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAAGGTTTGGAACCAAAGGTTGTTCACCGGGATATTAAATCAAGCAACATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAACAGCTACATTACAACACGAGTGATGGGGACATTTGGCTATGTAGCACCAGAGTATGCAAGTACAGGCATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGAAGGAACCCTGTTGACTATAGTCGTCCTCCAGATGAGGTGAACTTGATTGATTGGCTTAAGAGAATGGTCAGTAACCGGAATCCAGAAGGCGTATTGGATCCAAAGCTCTCTGAGAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTGCGTTGTGTGGACCCAAATGCTCAAAAGCGGCCAAAAATGGGACACATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAACTCACATTCAGACAATGTGAAGGATGGTTTAAATGAGAGGCAGGCGACAGAATTAGGTGGAAGCAATGGGGATGAACTCGATACTCGACAATGA 1521 45.63 MSDHKSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRRKISHRPTIPIVSKEIQEIRIDHALAQNHEHKPSRAHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATFKGDRKAGKDPENSHSDNVKDGLNERQATELGGSNGDELDTRQ 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8644986 8647597 + Maker00012645 Lcy1g0980 622892
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g0980 506 MobiDBLite consensus disorder prediction 464 506 - -
Lcy1g0980 506 ProSiteProfiles Protein kinase domain profile. 186 464 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0980 506 PANTHER OS01G0323000 PROTEIN 7 485 IPR052232 -
Lcy1g0980 506 ProSitePatterns Protein kinases ATP-binding region signature. 192 214 IPR017441 GO:0005524(InterPro)
Lcy1g0980 506 MobiDBLite consensus disorder prediction 464 487 - -
Lcy1g0980 506 FunFam Probable serine/threonine-protein kinase At1g01540 166 261 - -
Lcy1g0980 506 FunFam Putative receptor-like serine/threonine-protein kinase 262 472 - -
Lcy1g0980 506 SUPERFAMILY Protein kinase-like (PK-like) 167 458 IPR011009 -
Lcy1g0980 506 Pfam Protein kinase domain 190 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0980 506 CDD STKc_IRAK 192 458 - -
Lcy1g0980 506 SMART serkin_6 186 457 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g0980 506 Gene3D Phosphorylase Kinase; domain 1 167 261 - -
Lcy1g0980 506 ProSitePatterns Serine/Threonine protein kinases active-site signature. 308 320 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g0980 506 Gene3D Transferase(Phosphotransferase) domain 1 262 472 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g1993 Lcy-Chr11:43535757 Lcy1g0980 Lcy-Chr1:8644986 2.64E-205 dispersed
Lcy1g0980 Lcy-Chr1:8644986 Lcy8g1625 Lcy-Chr8:42832368 4.05E-169 dispersed
Lcy1g0980 Lcy-Chr1:8644986 Lcy13g2091 Lcy-Chr13:39893780 2.53E-247 wgd
Lcy1g0980 Lcy-Chr1:8644986 Lcy5g0069 Lcy-Chr5:797078 1.86E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65649 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g0980 - - - 0.0