Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g0980 | ATGTCTGATCACAAATCAGGCTCCATGACCGACCAGCTCTCCAAGCAGACCTCTATTTTTGGCCTACGCTTGTGGGTTGTTCTTGGGGTTTGTGTTGGAGCCGCTTTTGTGCTTTTTCTGTTTCTAATTTCTCTTTGGATTGCCTCCAAACGCTCTCGCAGGAAGATTTCTCACAGACCCACAATTCCAATCGTCTCCAAAGAAATCCAGGAGATCAGAATCGATCATGCCCTCGCTCAGAACCATGAACATAAGCCTAGTAGAGCCCATTTTCAGGTCGACCCTCTTCCGGAACCGGAGCCAATCCCCGGAATTGAGCGGCAAGCGCTGCTTTCGTTGCCTCAGGAGGAAGAGCGAGTGAATAGGATTCATATTGAGATAGGGAAGGATCATAGGATTTCATATCCTGAGCGACTTGGTCGGTCGTCTTCCTCACAGGGCAGTGGAGAGGGCCGATGTGGTGGCGATCAGTTGCCTATGGTGGTGCCTGAAGTTTCGCATTTGGGTTGGGGGCATTGGTACACTCTCAGGGAGCTCGAAGCTTCGACTAATGGTTTTGCCCCTGATAACGTAATCGGTGAAGGTGGGTATGGAATTGTTTACCATGGCATTTTAGAGGATGGAACTCAGGTTGCTGTTAAGAATTTGCTAAACAACAGGGGACAAGCCGAGAAGGAGTTTAAAGTTGAAGTTGAAGCAATTGGACGAGTCAGACATAAGAACTTGGTTAGATTGCTCGGATACTGTGCTGAAGGTGCTCATAGGATGCTTGTATATGAGTACATTAATAATGGAAACTTGGAACAATGGCTTCATGGGGATGTAGGATCTTTCAGTCCTCTTACCTGGGAGATTAGAATGAATATCATTCTTGGAACCGCAAAAGGGCTAGCTTACCTTCACGAAGGTTTGGAACCAAAGGTTGTTCACCGGGATATTAAATCAAGCAACATCTTACTCGATAAGCAATGGAATTCCAAGGTTTCAGATTTTGGGCTTGCAAAGCTACTATGCTCTGATAACAGCTACATTACAACACGAGTGATGGGGACATTTGGCTATGTAGCACCAGAGTATGCAAGTACAGGCATGCTAAATGAAAGAAGTGATGTGTATAGTTTTGGAATACTTGTTATGGAAATAATCTCAGGAAGGAACCCTGTTGACTATAGTCGTCCTCCAGATGAGGTGAACTTGATTGATTGGCTTAAGAGAATGGTCAGTAACCGGAATCCAGAAGGCGTATTGGATCCAAAGCTCTCTGAGAAGCCTACTTCAAGAGCATTAAAGCGGGCTCTTCTTGTTGCATTGCGTTGTGTGGACCCAAATGCTCAAAAGCGGCCAAAAATGGGACACATTATTCATATGCTTGAAGCTGAAGAGGCTACCTTTAAAGGGGATCGCAAAGCTGGAAAGGACCCAGAGAACTCACATTCAGACAATGTGAAGGATGGTTTAAATGAGAGGCAGGCGACAGAATTAGGTGGAAGCAATGGGGATGAACTCGATACTCGACAATGA | 1521 | 45.63 | MSDHKSGSMTDQLSKQTSIFGLRLWVVLGVCVGAAFVLFLFLISLWIASKRSRRKISHRPTIPIVSKEIQEIRIDHALAQNHEHKPSRAHFQVDPLPEPEPIPGIERQALLSLPQEEERVNRIHIEIGKDHRISYPERLGRSSSSQGSGEGRCGGDQLPMVVPEVSHLGWGHWYTLRELEASTNGFAPDNVIGEGGYGIVYHGILEDGTQVAVKNLLNNRGQAEKEFKVEVEAIGRVRHKNLVRLLGYCAEGAHRMLVYEYINNGNLEQWLHGDVGSFSPLTWEIRMNIILGTAKGLAYLHEGLEPKVVHRDIKSSNILLDKQWNSKVSDFGLAKLLCSDNSYITTRVMGTFGYVAPEYASTGMLNERSDVYSFGILVMEIISGRNPVDYSRPPDEVNLIDWLKRMVSNRNPEGVLDPKLSEKPTSRALKRALLVALRCVDPNAQKRPKMGHIIHMLEAEEATFKGDRKAGKDPENSHSDNVKDGLNERQATELGGSNGDELDTRQ | 506 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8644986 | 8647597 | + | Maker00012645 | Lcy1g0980 | 622892 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g0980 | 506 | MobiDBLite | consensus disorder prediction | 464 | 506 | - | - | |
Lcy1g0980 | 506 | ProSiteProfiles | Protein kinase domain profile. | 186 | 464 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g0980 | 506 | PANTHER | OS01G0323000 PROTEIN | 7 | 485 | IPR052232 | - | |
Lcy1g0980 | 506 | ProSitePatterns | Protein kinases ATP-binding region signature. | 192 | 214 | IPR017441 | GO:0005524(InterPro) | |
Lcy1g0980 | 506 | MobiDBLite | consensus disorder prediction | 464 | 487 | - | - | |
Lcy1g0980 | 506 | FunFam | Probable serine/threonine-protein kinase At1g01540 | 166 | 261 | - | - | |
Lcy1g0980 | 506 | FunFam | Putative receptor-like serine/threonine-protein kinase | 262 | 472 | - | - | |
Lcy1g0980 | 506 | SUPERFAMILY | Protein kinase-like (PK-like) | 167 | 458 | IPR011009 | - | |
Lcy1g0980 | 506 | Pfam | Protein kinase domain | 190 | 455 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g0980 | 506 | CDD | STKc_IRAK | 192 | 458 | - | - | |
Lcy1g0980 | 506 | SMART | serkin_6 | 186 | 457 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g0980 | 506 | Gene3D | Phosphorylase Kinase; domain 1 | 167 | 261 | - | - | |
Lcy1g0980 | 506 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 308 | 320 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g0980 | 506 | Gene3D | Transferase(Phosphotransferase) domain 1 | 262 | 472 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy11g1993 | Lcy-Chr11:43535757 | Lcy1g0980 | Lcy-Chr1:8644986 | 2.64E-205 | dispersed | |
Lcy1g0980 | Lcy-Chr1:8644986 | Lcy8g1625 | Lcy-Chr8:42832368 | 4.05E-169 | dispersed | |
Lcy1g0980 | Lcy-Chr1:8644986 | Lcy13g2091 | Lcy-Chr13:39893780 | 2.53E-247 | wgd | |
Lcy1g0980 | Lcy-Chr1:8644986 | Lcy5g0069 | Lcy-Chr5:797078 | 1.86E-46 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65649 | None | None | None | None | Lcy | PK |
Pathway information
