Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g0983 | ATGGAGTGGATTCGAGGAGATGAAATTGGACATGGCAGTTTTGCGACGATCAGTTTAGCGATGCCTTCCAAGACCTGTGGGGCTCAGTTTCCTCCATTAATGGCGGTTAAATCGTCTGGAGCTCTCTGCTCTGCCTCGCTTAAGAACGAGAAGCAAGTTTTGGATCTTTTGGGCGATTGCCCACAAATTATTCGCTGTTTTGGAGAGAGCTGCAGCGTCGAGAACGGCCAGGAGTTTTACAATTTGTTTCTTGACTATGCCAGTGGTGGGAGTCTAGCCGACAGGATACAGAGCCGCGGTGGTCGGCTGCCGGAATTTGAGGTTCGGCGGTACACCAGGACGATTCTCGAAGGGCTTCGGTATATTCACGGGAAAGGATTTGTCCACTGCGATGTAAAGCCTCGGAATATTCTCGTGTTTGGTGATGGCGATGCTAAGATTGCTGATTTCGGATTGTCGAAGAAGGCGGGAGAAAACAGAGCAGAAACAGAGGAAGAGGGGAGATTTCAATTGAGAGGCTCTCCTCTGTACATGTCGCCGGAATCGGTCAACGACAACGAGTACGAGTCGCCGTGTGACATATGGGCCGTCGGATGCGCGGTGGTGGAGATGTTTACCGGAAAACCCGCCTGGAATTGCCGGCCGGAATCCAACATCTATTCTCTGTTACTCAAAATTGGGATCGGAGAGGAATTGCCGGAAATTCCTAAAGATCTATCCGAGGAAGGGAAAGATTTTCTGGGTAAATGCTTGATTAAGGATCCTGCAAAGAGATGGACGGCTGAGATGCTTTTAAATCACCCGTTCATGGCAGACTCCGGCAGGTCTGTTCCATTGACGGACAAGGACGAAGCATCAACGTCGCCGAGATGCCCTTTCGATTTCGAAGATTGGGCATCGATTGAGTCACAAGAGGTGGATCATAGATTTGAAGAGGAATCAGAATTTTGGTTGGATTCGTCGTGTTCGTGGTCGTCTTCCCCGACGGAGCGGCTGCTGGAGCTAGTGGACAATGGGGCAGCTGATTGGTCCGTCAGTGACAGTTGGGTCACCGTCAGATGA | 1062 | 50.56 | MEWIRGDEIGHGSFATISLAMPSKTCGAQFPPLMAVKSSGALCSASLKNEKQVLDLLGDCPQIIRCFGESCSVENGQEFYNLFLDYASGGSLADRIQSRGGRLPEFEVRRYTRTILEGLRYIHGKGFVHCDVKPRNILVFGDGDAKIADFGLSKKAGENRAETEEEGRFQLRGSPLYMSPESVNDNEYESPCDIWAVGCAVVEMFTGKPAWNCRPESNIYSLLLKIGIGEELPEIPKDLSEEGKDFLGKCLIKDPAKRWTAEMLLNHPFMADSGRSVPLTDKDEASTSPRCPFDFEDWASIESQEVDHRFEEESEFWLDSSCSWSSSPTERLLELVDNGAADWSVSDSWVTVR | 353 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 8666382 | 8667443 | - | Maker00012272 | Lcy1g0983 | 622895 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g0983 | 353 | SMART | serkin_6 | 3 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy1g0983 | 353 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 127 | 139 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
| Lcy1g0983 | 353 | CDD | STKc_MAPKKK | 2 | 269 | - | - | |
| Lcy1g0983 | 353 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 293 | IPR011009 | - | |
| Lcy1g0983 | 353 | PANTHER | CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED | 2 | 271 | IPR052751 | GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
| Lcy1g0983 | 353 | ProSiteProfiles | Protein kinase domain profile. | 3 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy1g0983 | 353 | Pfam | Protein kinase domain | 6 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
| Lcy1g0983 | 353 | ProSitePatterns | Protein kinases ATP-binding region signature. | 9 | 37 | IPR017441 | GO:0005524(InterPro) | |
| Lcy1g0983 | 353 | Gene3D | Transferase(Phosphotransferase) domain 1 | 94 | 315 | - | - | |
| Lcy1g0983 | 353 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 93 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g0456 | Lcy-Chr1:4000937 | Lcy1g0983 | Lcy-Chr1:8666382 | 6.19E-63 | dispersed | |
| Lcy1g0983 | Lcy-Chr1:8666382 | Lcy8g0839 | Lcy-Chr8:30343544 | 7.16E-145 | dispersed | |
| Lcy13g1285 | Lcy-Chr13:30095776 | Lcy1g0983 | Lcy-Chr1:8666382 | 2.19E-38 | transposed | |
| Lcy1g0983 | Lcy-Chr1:8666382 | Lcy5g0076 | Lcy-Chr5:838312 | 3.19E-07 | wgd | |
| Lcy1g0983 | Lcy-Chr1:8666382 | Lcy8g1492 | Lcy-Chr8:41570728 | 2.56E-06 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 65650 | None | None | None | None | Lcy | PK |
Pathway information