Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1007 ATGAAGGATAACTCCTCCAAACTTGTTTTCTTGCTTATAAGCTTCTTTTTCTTGAATCAGCTCCTCGTGTCCTCACAACTTGATTATAGGTTTTATGATGCCTCTTGTCCCAACCTATTAAGGATTGTCAGATATGGCGTCTGGATGGCAGTTTCTAATGATACTAGGATGGCTGCTTCTCTCTTGCGGCTTCATTTTCATGATTGCTTTGTCAACGGCTGTGATGGATCATTGTTGCTTGATGACACTAGCACATTTAAGGGGGAGAAAAATGCATTGCCGAATATGAACTCAGTTCGAGGCTATGAGGTCATTGATAATATAAAGGCTGTTTTAGAGAGAGCCTGCCCATCCGTCGTCTCATGTACCGATATAGTAACTCTAGCAGCTAGAGAGGCCGTCTACCTTGCTGGAGGACCATTTTGGCCCATTCCACTTGGTCGCCGAGATGGCACGACAGCGAGCGAGAGTGAAGCCAATCAGCTGCCATCACCAGTGGAGCCATTGGAGAATATCGTTGCAAAGTTCACTTCAAAAGGTCTTGATGTAAAGGATGTTGTTGTGCTCTCAGGTGCACACACTTTTGGATTTGCTCGGTGCATGATGTTCAAGCATAGGCTCTTCAACTTCGACGGCTCTGGAAATCCCGATCCAGAACTCGACGTGATGCTACGACAGAACTTACAGAGCACCTGCCCAAATCAAGATGACTCCAACAATAACCTGGCTCCCTTGGACGCCTACACGACCAACAGGTTCGACAATGTGTATTACAGGAACTTGGTGAACAAGTTGGGACTTCTGCAGTCAGACCAAGCCCTCATGAATGACAATACAACTGCTCCTTTGGTGGTGAACTACAGCAGGTACCCATATCTGTTTTACAGGGACTTTGGAGCATCAATGGTGAAGCTGGCCAATACTGGGATCCTTACAGGCCAAAATGGCGAGATTAGGAAGAACTGCAGGGTCGTGAACTAG 981 46.38 MKDNSSKLVFLLISFFFLNQLLVSSQLDYRFYDASCPNLLRIVRYGVWMAVSNDTRMAASLLRLHFHDCFVNGCDGSLLLDDTSTFKGEKNALPNMNSVRGYEVIDNIKAVLERACPSVVSCTDIVTLAAREAVYLAGGPFWPIPLGRRDGTTASESEANQLPSPVEPLENIVAKFTSKGLDVKDVVVLSGAHTFGFARCMMFKHRLFNFDGSGNPDPELDVMLRQNLQSTCPNQDDSNNNLAPLDAYTTNRFDNVYYRNLVNKLGLLQSDQALMNDNTTAPLVVNYSRYPYLFYRDFGASMVKLANTGILTGQNGEIRKNCRVVN 326
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8994019 8996903 - Maker00012624 Lcy1g1007 622919
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1007 326 PRINTS Plant peroxidase signature 119 129 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 244 259 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 60 80 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 260 277 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 300 313 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 184 196 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 138 153 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 36 55 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Plant peroxidase signature 100 113 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 Gene3D - 30 326 - -
Lcy1g1007 326 ProSitePatterns Peroxidases proximal heme-ligand signature. 185 195 IPR019793 -
Lcy1g1007 326 FunFam Peroxidase 163 305 - -
Lcy1g1007 326 PANTHER PEROXIDASE 72-RELATED 15 325 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 SUPERFAMILY Heme-dependent peroxidases 26 326 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 ProSitePatterns Peroxidases active site signature. 58 69 IPR019794 GO:0004601(InterPro)
Lcy1g1007 326 Gene3D Peroxidase, domain 2 163 305 - -
Lcy1g1007 326 ProSiteProfiles Plant heme peroxidase family profile. 26 326 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 Pfam Peroxidase 44 288 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 FunFam Peroxidase 30 178 - -
Lcy1g1007 326 CDD secretory_peroxidase 26 325 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Lcy1g1007 326 PRINTS Haem peroxidase superfamily signature 246 261 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Haem peroxidase superfamily signature 58 72 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Haem peroxidase superfamily signature 185 200 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Haem peroxidase superfamily signature 138 150 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Lcy1g1007 326 PRINTS Haem peroxidase superfamily signature 120 137 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g2142 Lcy-Chr8:47576073 2.06E-116 dispersed
Lcy3g1228 Lcy-Chr3:37825286 Lcy1g1007 Lcy-Chr1:8994019 3.06E-57 transposed
Lcy5g2086 Lcy-Chr5:43952781 Lcy1g1007 Lcy-Chr1:8994019 2.03E-82 transposed
Lcy8g1666 Lcy-Chr8:43272899 Lcy1g1007 Lcy-Chr1:8994019 2.30E-83 transposed
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g1056 Lcy-Chr8:36318939 6.20E-130 wgd
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g0730 Lcy-Chr8:26949638 5.26E-57 wgd
Lcy1g1007 Lcy-Chr1:8994019 Lcy8g1452 Lcy-Chr8:41193682 1.99E-77 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1007 K00430 - csv:101218459 612.453