Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1008 ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCCTCCATGGTGAGGTTTCCGGGCACTGCCACCGGTGGTGATTCTCCTTCCAGAACGACCGCCACTACTGCCTCTGATAATCATAGTTATCGGAGAATTGCTTGGCGTTTTGGCGCCTCTAAGTATTCGCGCCATAGGAAGCTACGGAACCTAAGCGGACGTGAACATAACGCTGCTTCTTTGGCTAAATGGTCTGATTCTTCCGCCGAGCCGGTCTCCTTGTCGCGATCGCCGAGTGCCTCTGATGACCATGCCGTGCCCTTGCCGCTCCCGGAGGTTTCTCCCGTATTTCAGCGTCGTGAAGGGGTTTCGAATTCCAATTCTTTCACTGGAGACGGGGATTGCCCTCTTCCGTCGCCTAAGGTTTGGCGTGGTAGAAGCGGGGATGAGCGCGATGTAGATAGAGATAGAACTGCTCCTGCTCCAAAAGTTGGGGGCGGGGCCTCCACTAGCGCTCCGGTTAAAAGTCTATTTGATTCCCGGGAGAACCAAAAGAAAGAAGATCAGGTTGAGACAAGGTCGTCTCGGAGGGTGAATCAAGATGCAACAGGATATCCTGAAAGATCTCGGAACCGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCAACTAGTCCTTATGCAAGTCCAACGCTCAGTCCCCAAAGAAATAGTTCCGGTAACCTTTCAAATTTCCATCATGTGGCTCCAGTGGGAAATCAAGACTGGTCTGCACCTGAGCTGCCAAATTTCCATTATGCAACTCCAGTAGGAAATTACGTCTGGTCTGCACCTGAGCTGCCAGCCTCACCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTCTTAGCTGTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTGCATCTCCATTGCACACCAAGATTTCCCTTGAAACACATGGTGCACGTCGTGAAGGTGCTTGTCCTATCAGTGTCCACCCTTTACCTCTTCCTCCTGGAGTACCAATGCCGTCATCATCAACCCCAATGGCTTCACCATCAACTCCAATGGCTTCACCATCAATCCCAATGCCTTCACCATCAACCACAATGCCTTCACCATCAATCCCAATGCCTTCACCATCAACCTCAATGCCTTTACCTTCAACCCCAATACCTTCACCAACCCCAATTCCACAAGCTAACACTAAAACTGAGTCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAATTATTTCCTGACGATCCAAAATCTGCTGAATGTATAAAGCAATTAGAACAGGAGATAAAGCTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGCAGTGACATTGTTGAAGATAGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAAACTATACACCGGTGGGGAACATATGTGTTGATGGACATTAAAGGTGCTAATTTGCTTGTGGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTATCTGTGATGCAGAAAGATAACAACTCTGATCTTGCTCTGGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGCGAGATACCCCGACAATACCTGATTCATTGTCATATGAAGCCAGAGATTTCTTAAAATGTTGCTTTCAGAGAAATCCTGCAGAGAGGCCGACTGCTGCCATGCTGCTTGAACATCCGTTTATGAAAAACTTGCAGCATCCAGATGCTCCATCTTGCTTGCAGGCCGTTGCTGGAGCAAATTTGATGGATAAATGCTATAGTCCAAGTGAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAATTTCAAGGGAAAGTTAGCAGCTGAGAGGCAAGAGTTTCTTTTTCGCTTGCTCCCCAGTTCTCGTTTTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAGTATTATCTCCTCCACGCTCAGTTCACAATGTGCATAATCTTGGTTCCCCTGCAAACGTTTGCCTCCGACTTTGCTTGGTACCTTCAATCGACAAGCATTTGGCAGGGGTGGCTAAAGTATCGGCAAAAAATGAGCTTCATGAGAAGAAGCCAGATTCAGATGCTGCGTCTAGCCAAGTCTTGGCAGCCGAAACTGGTTTGGTCATTACTGTTCTACCAATCACATTCTGCAAAGTTGCGTTGCCGTATTTTAGTGGAACTGTGGAAGGACCAATCTACTAA 2643 46.84 MRWLRNISFTPSSMVRFPGTATGGDSPSRTTATTASDNHSYRRIAWRFGASKYSRHRKLRNLSGREHNAASLAKWSDSSAEPVSLSRSPSASDDHAVPLPLPEVSPVFQRREGVSNSNSFTGDGDCPLPSPKVWRGRSGDERDVDRDRTAPAPKVGGGASTSAPVKSLFDSRENQKKEDQVETRSSRRVNQDATGYPERSRNRFWIDVPSRSAPTSPYASPTLSPQRNSSGNLSNFHHVAPVGNQDWSAPELPNFHYATPVGNYVWSAPELPASPMMRGVPPAFFDGSTLSCESSPMHSPRGRSPHRDPRSPTGAASPLHTKISLETHGARREGACPISVHPLPLPPGVPMPSSSTPMASPSTPMASPSIPMPSPSTTMPSPSIPMPSPSTSMPLPSTPIPSPTPIPQANTKTESISMKNQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFPDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRWGTYVLMDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPTIPDSLSYEARDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDAPSCLQAVAGANLMDKCYSPSEQYSSKFDQSSMLPSSQNFKGKLAAERQEFLFRLLPSSRFVIGPLSHHETSDLTVMSRYSPRSTLEALPVLSPPRSVHNVHNLGSPANVCLRLCLVPSIDKHLAGVAKVSAKNELHEKKPDSDAASSQVLAAETGLVITVLPITFCKVALPYFSGTVEGPIY 880
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 8999405 9006564 - Maker00012881 Lcy1g1008 622920
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1008 880 ProSitePatterns Protein kinases ATP-binding region signature. 428 451 IPR017441 GO:0005524(InterPro)
Lcy1g1008 880 Gene3D Transferase(Phosphotransferase) domain 1 418 728 - -
Lcy1g1008 880 FunFam Mitogen-activated protein kinase kinase kinase 5 419 727 - -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 71 232 - -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 288 320 - -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 110 124 - -
Lcy1g1008 880 Pfam Protein kinase domain 423 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1008 880 MobiDBLite consensus disorder prediction 347 396 - -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 72 91 - -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 15 36 - -
Lcy1g1008 880 SUPERFAMILY Protein kinase-like (PK-like) 402 730 IPR011009 -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 213 232 - -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 135 150 - -
Lcy1g1008 880 ProSiteProfiles Protein kinase domain profile. 422 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1008 880 SMART serkin_6 422 690 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1008 880 MobiDBLite consensus disorder prediction 170 186 - -
Lcy1g1008 880 MobiDBLite consensus disorder prediction 364 396 - -
Lcy1g1008 880 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 74 696 IPR050538 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0039 Lcy-Chr12:651534 Lcy1g1008 Lcy-Chr1:8999405 5.49E-92 dispersed
Lcy1g1008 Lcy-Chr1:8999405 Lcy1g1154 Lcy-Chr1:10810632 5.08E-87 dispersed
Lcy13g2029 Lcy-Chr13:39281776 Lcy1g1008 Lcy-Chr1:8999405 1.68E-157 transposed
Lcy1g1008 Lcy-Chr1:8999405 Lcy8g1430 Lcy-Chr8:40953190 4.86E-40 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65652 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1008 - - - 0.0