Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1008 | ATGCGTTGGTTGCGTAACATCTCCTTTACCCCTTCCTCCATGGTGAGGTTTCCGGGCACTGCCACCGGTGGTGATTCTCCTTCCAGAACGACCGCCACTACTGCCTCTGATAATCATAGTTATCGGAGAATTGCTTGGCGTTTTGGCGCCTCTAAGTATTCGCGCCATAGGAAGCTACGGAACCTAAGCGGACGTGAACATAACGCTGCTTCTTTGGCTAAATGGTCTGATTCTTCCGCCGAGCCGGTCTCCTTGTCGCGATCGCCGAGTGCCTCTGATGACCATGCCGTGCCCTTGCCGCTCCCGGAGGTTTCTCCCGTATTTCAGCGTCGTGAAGGGGTTTCGAATTCCAATTCTTTCACTGGAGACGGGGATTGCCCTCTTCCGTCGCCTAAGGTTTGGCGTGGTAGAAGCGGGGATGAGCGCGATGTAGATAGAGATAGAACTGCTCCTGCTCCAAAAGTTGGGGGCGGGGCCTCCACTAGCGCTCCGGTTAAAAGTCTATTTGATTCCCGGGAGAACCAAAAGAAAGAAGATCAGGTTGAGACAAGGTCGTCTCGGAGGGTGAATCAAGATGCAACAGGATATCCTGAAAGATCTCGGAACCGTTTTTGGATTGATGTTCCCAGTAGGAGTGCTCCAACTAGTCCTTATGCAAGTCCAACGCTCAGTCCCCAAAGAAATAGTTCCGGTAACCTTTCAAATTTCCATCATGTGGCTCCAGTGGGAAATCAAGACTGGTCTGCACCTGAGCTGCCAAATTTCCATTATGCAACTCCAGTAGGAAATTACGTCTGGTCTGCACCTGAGCTGCCAGCCTCACCAATGATGCGGGGGGTTCCTCCTGCATTCTTTGATGGCTCCACTCTTAGCTGTGAGAGTTCTCCCATGCATAGCCCAAGAGGTAGAAGTCCCCACCGAGATCCCAGAAGTCCAACAGGAGCTGCATCTCCATTGCACACCAAGATTTCCCTTGAAACACATGGTGCACGTCGTGAAGGTGCTTGTCCTATCAGTGTCCACCCTTTACCTCTTCCTCCTGGAGTACCAATGCCGTCATCATCAACCCCAATGGCTTCACCATCAACTCCAATGGCTTCACCATCAATCCCAATGCCTTCACCATCAACCACAATGCCTTCACCATCAATCCCAATGCCTTCACCATCAACCTCAATGCCTTTACCTTCAACCCCAATACCTTCACCAACCCCAATTCCACAAGCTAACACTAAAACTGAGTCAATCTCAATGAAAAATCAATGGCAGAAAGGAAAGCTTATTGGCCGGGGCACATTTGGAAGTGTTTATGTTGCAAGCAACAGAGAAAATGGAGCTTTATGTGCAATGAAGGAAGTTGAATTATTTCCTGACGATCCAAAATCTGCTGAATGTATAAAGCAATTAGAACAGGAGATAAAGCTTCTGAGCCAGCTAAAGCATCCAAATATTGTCCAGTACTATGGCAGTGACATTGTTGAAGATAGATTATATATATACCTGGAGTATGTTCATCCTGGTTCAATTAATAAATATGTCCGTGAACATTGTGGAGCCATGACAGAATCTGTTGTTCGGAATTTTACTCGTCACATCCTCTCAGGGTTGGCCTACTTGCACAGCACAAAAACTATACACCGGTGGGGAACATATGTGTTGATGGACATTAAAGGTGCTAATTTGCTTGTGGACTCTTGTGGGGTTGTCAAGCTTGCTGACTTTGGAATGGCTAAACATCTTACAGGACAAGTTGCTGATCTCTCTTTAAAGGGAAGTCCATACTGGATGGCTCCTGAGCTCCTTCTATCTGTGATGCAGAAAGATAACAACTCTGATCTTGCTCTGGCTGTTGATATTTGGAGCCTTGGTTGCACTATTATAGAAATGTTCACTGGCAAGCCACCTTGGAGCGAGTATGAAGGGGCTGCAGCTATGTTTAAGGTCATGCGAGATACCCCGACAATACCTGATTCATTGTCATATGAAGCCAGAGATTTCTTAAAATGTTGCTTTCAGAGAAATCCTGCAGAGAGGCCGACTGCTGCCATGCTGCTTGAACATCCGTTTATGAAAAACTTGCAGCATCCAGATGCTCCATCTTGCTTGCAGGCCGTTGCTGGAGCAAATTTGATGGATAAATGCTATAGTCCAAGTGAACAATATTCAAGTAAATTTGATCAGTCTTCCATGCTTCCAAGCTCACAAAATTTCAAGGGAAAGTTAGCAGCTGAGAGGCAAGAGTTTCTTTTTCGCTTGCTCCCCAGTTCTCGTTTTGTGATTGGCCCACTATCTCATCATGAAACCTCTGACTTAACAGTAATGTCTCGTTATTCCCCCCGTTCTACCCTTGAGGCTCTTCCAGTATTATCTCCTCCACGCTCAGTTCACAATGTGCATAATCTTGGTTCCCCTGCAAACGTTTGCCTCCGACTTTGCTTGGTACCTTCAATCGACAAGCATTTGGCAGGGGTGGCTAAAGTATCGGCAAAAAATGAGCTTCATGAGAAGAAGCCAGATTCAGATGCTGCGTCTAGCCAAGTCTTGGCAGCCGAAACTGGTTTGGTCATTACTGTTCTACCAATCACATTCTGCAAAGTTGCGTTGCCGTATTTTAGTGGAACTGTGGAAGGACCAATCTACTAA | 2643 | 46.84 | MRWLRNISFTPSSMVRFPGTATGGDSPSRTTATTASDNHSYRRIAWRFGASKYSRHRKLRNLSGREHNAASLAKWSDSSAEPVSLSRSPSASDDHAVPLPLPEVSPVFQRREGVSNSNSFTGDGDCPLPSPKVWRGRSGDERDVDRDRTAPAPKVGGGASTSAPVKSLFDSRENQKKEDQVETRSSRRVNQDATGYPERSRNRFWIDVPSRSAPTSPYASPTLSPQRNSSGNLSNFHHVAPVGNQDWSAPELPNFHYATPVGNYVWSAPELPASPMMRGVPPAFFDGSTLSCESSPMHSPRGRSPHRDPRSPTGAASPLHTKISLETHGARREGACPISVHPLPLPPGVPMPSSSTPMASPSTPMASPSIPMPSPSTTMPSPSIPMPSPSTSMPLPSTPIPSPTPIPQANTKTESISMKNQWQKGKLIGRGTFGSVYVASNRENGALCAMKEVELFPDDPKSAECIKQLEQEIKLLSQLKHPNIVQYYGSDIVEDRLYIYLEYVHPGSINKYVREHCGAMTESVVRNFTRHILSGLAYLHSTKTIHRWGTYVLMDIKGANLLVDSCGVVKLADFGMAKHLTGQVADLSLKGSPYWMAPELLLSVMQKDNNSDLALAVDIWSLGCTIIEMFTGKPPWSEYEGAAAMFKVMRDTPTIPDSLSYEARDFLKCCFQRNPAERPTAAMLLEHPFMKNLQHPDAPSCLQAVAGANLMDKCYSPSEQYSSKFDQSSMLPSSQNFKGKLAAERQEFLFRLLPSSRFVIGPLSHHETSDLTVMSRYSPRSTLEALPVLSPPRSVHNVHNLGSPANVCLRLCLVPSIDKHLAGVAKVSAKNELHEKKPDSDAASSQVLAAETGLVITVLPITFCKVALPYFSGTVEGPIY | 880 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 8999405 | 9006564 | - | Maker00012881 | Lcy1g1008 | 622920 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1008 | 880 | ProSitePatterns | Protein kinases ATP-binding region signature. | 428 | 451 | IPR017441 | GO:0005524(InterPro) | |
Lcy1g1008 | 880 | Gene3D | Transferase(Phosphotransferase) domain 1 | 418 | 728 | - | - | |
Lcy1g1008 | 880 | FunFam | Mitogen-activated protein kinase kinase kinase 5 | 419 | 727 | - | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 71 | 232 | - | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 288 | 320 | - | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 110 | 124 | - | - | |
Lcy1g1008 | 880 | Pfam | Protein kinase domain | 423 | 690 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 347 | 396 | - | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 72 | 91 | - | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 15 | 36 | - | - | |
Lcy1g1008 | 880 | SUPERFAMILY | Protein kinase-like (PK-like) | 402 | 730 | IPR011009 | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 213 | 232 | - | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 135 | 150 | - | - | |
Lcy1g1008 | 880 | ProSiteProfiles | Protein kinase domain profile. | 422 | 690 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1008 | 880 | SMART | serkin_6 | 422 | 690 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 170 | 186 | - | - | |
Lcy1g1008 | 880 | MobiDBLite | consensus disorder prediction | 364 | 396 | - | - | |
Lcy1g1008 | 880 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 74 | 696 | IPR050538 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0039 | Lcy-Chr12:651534 | Lcy1g1008 | Lcy-Chr1:8999405 | 5.49E-92 | dispersed | |
Lcy1g1008 | Lcy-Chr1:8999405 | Lcy1g1154 | Lcy-Chr1:10810632 | 5.08E-87 | dispersed | |
Lcy13g2029 | Lcy-Chr13:39281776 | Lcy1g1008 | Lcy-Chr1:8999405 | 1.68E-157 | transposed | |
Lcy1g1008 | Lcy-Chr1:8999405 | Lcy8g1430 | Lcy-Chr8:40953190 | 4.86E-40 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65652 | None | None | None | None | Lcy | PK |
Pathway information
