Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1044 ATGGGTTTCGTTCCAGATCTGAAACGAGGGGGATTTCCCCTTCGTTTCAGGTCGTTCCCTTCGATTTCAGCCGCGCGTGCGAGGACAGAAGCTTCTTACGGCGGGTCTGGGTTACAAACGAGCAGCGACGGCTTTGTGTTACGTACAAGCAGCGGCACCGGTGGATCTGAAGCTTCTTACGGCGAGTCTGGGTTACAAATGAGCAGCGGCGGTTCTGGACTTTCCCTTTCCGTTTTCCATCAAAATCAAGAAGCCTTGCGATTCAGGTCGTTCTTGAGAACGATTTTGGGATTCAAATTTCTCTTCGATTTAAACCTAATCTATAAATTTGCCTCTGAAATCGACTTGAATGATCGTGTCGACCTCGTCTCTAACCAGCGTCCAGGTGTGATTAACAGAGCATTTACTGCCATTGAAGAGCGAGTTTCTGTTCTAATTCTGCTGATCGCAGGGGATGATTCTGTTTGTTTCTCATTCAGTTGGAGTAAGTTGCAGTCAACTATGACTTTGCACCGAAGCTTTTTGATCGTTATAATCGCAATTTTCTCGGCCTTTTTAACAATCGCCGAGAAGTTAACGTCCTGCGAAACCGGGAATTCGGCTGAATTTGTACGCCATCCGTTTGGATTCTCAAGCTCGAGCCCAATCAAATTGAATTGCAGCAAAAATGGCGAGACTCAAATCGGCACATTCCAGGTCCGGAACATTACTGAAAGGAGCATCCTCATCAAACTTCCTGCAGAGTGCAGCATCTCTATCAATTCAATTTCAGAACTGTACGGCAAAAACTACATGCCCACTCGCCGCAACAGTCTCATCTTGAATTGTACTGAACAACCTATCCCATGCCAAATACCTGCCAATTTGAGCCAGCATCTGCCGAACTGCAGTTTTAAGAGCAATAATCTCAGCTGCTTCACCAAAACCGAACAAAATGGATTTCTGCCCTCTTTAAATAAGTGCCAGTCCCTTTTTTCCTCTTTATTCGTTAATTCTACATCAAAATCGGCCTCTTTGTTGGAGTTCGAGGTGGAGCTCGGGGTCATTGAGTTAGAGTGGTGGCTTCCACCCTTGGCTTCCGTACGATGCTCAACAAATGCCAAACGCACGAACATTACTAGCTCGGGCCTCCTAGGATTTCGTTGCCAGTGCATAGAAGGGTTTGAAGGAAATGCTTACGACGACGCCGACAACGGCTGCCGGAAAGTTTCTCACCATTGCAATCCTTCAACATACATTACTGGTCGATGTGGCAGAGGCAAAGTCGTCCCTGCTCTAATTGCAGGTGTTTTTGTTGGAGCTTTTCTAATGGCTGTCCTGACCCTTCTCTGTTACTGCATCCGACGCCGCTCAATGTGTCTGAAAGGTCAGATGAGTGCAAAGCGGCTTCTAAGTGAGGCTGCTGGAAATTCCAGTGTTACTTTATATCCCTACAAAGAAATAGAAAGAGCCACTAATGGCTTCTCCGAGAAACAAAGGCTGGGAACTGGAGCCTTTGGTACAGTCTATGCAGGAAGGGTTCATGAGGATGAGTGGGTTGCTGTAAAAAGGATCAAATATAGAGACCACAATAGCATTGACCAGGTCATGAATGAGATAAAACTACTCTCCTCGGTGAGCCACCCGAATCTAGTCCGCTTGCTTGGCTGCTGTATTGAAGAAGGCCAACAGATCCTTGTCTATGAGTTTATGCCCAATGGAACTCTCTCTCAACATCTTCAGAGAGAGCGTGGAAATGGCCTTCCATGGACGACAAGACTCACCATTGCAGCTGAAACTTCTCGTGCAATAGCATACCTCCATTCTTCTGTGCATCCACCAATATATCACAGAGACATCAAGTCAAGCAATATACTTCTGGATCATGGCTTCAAATCAAAAGTTGCAGATTTTGGTCTTTCTAGACTTGGTATGACAGAAATATCACACGTCTCAACAGCTCCACAAGGGACCCCGGGATATGTTGATCCACAATACCATCAAAATTTCTATCTTTCAGATAAAAGTGATGTTTATAGTTTTGGAGTAGTCCTAGTAGAGATAATAACAGCATTGAAAGTGGTTGATTTCACTCGTCCCCAAAGTGAAGTAAACTTAGCTGCACTTGCCATCGATAGGATTGGGAGAGGTGCTGTGGACGAACTAATTGATCCTTTCCTCGAGCCACATAGAGATGCTTGGACCCTCTACTCTATTCACAAGGTGGCTGAGCTTGCATTCAGATGCCTTGCTTTTCATAGCGACATGAGGCCTTCAATGACAGAAGTAGCAGAGGAACTGGAATGCATCAGACGCAGTGGGTGGACATCAATGGAGGAGCATTTTTGTGCAGCATCATCAGCAGGATCAGCTTGCTCATCCCCTCGTAGCGTGAGCGAGAGATCCATAAGTGGCATCACAATGAAGAAAGCCGCGCTGCTTGCAGGATTGGGGAGCCAGAGATTGGTAATCCCACCGGAGAACAATCATCATAAGGACTATCTGCCTCCTGTAGAGGAAGTTATGGATAGTTCCCCAGTTTCCATACAGGATCCTTGGTTAAGTGAACAAAGCTCACCTTCAACAAATAGTTTATTGGGTAACGTAGCACGGTGA 2595 45.97 MGFVPDLKRGGFPLRFRSFPSISAARARTEASYGGSGLQTSSDGFVLRTSSGTGGSEASYGESGLQMSSGGSGLSLSVFHQNQEALRFRSFLRTILGFKFLFDLNLIYKFASEIDLNDRVDLVSNQRPGVINRAFTAIEERVSVLILLIAGDDSVCFSFSWSKLQSTMTLHRSFLIVIIAIFSAFLTIAEKLTSCETGNSAEFVRHPFGFSSSSPIKLNCSKNGETQIGTFQVRNITERSILIKLPAECSISINSISELYGKNYMPTRRNSLILNCTEQPIPCQIPANLSQHLPNCSFKSNNLSCFTKTEQNGFLPSLNKCQSLFSSLFVNSTSKSASLLEFEVELGVIELEWWLPPLASVRCSTNAKRTNITSSGLLGFRCQCIEGFEGNAYDDADNGCRKVSHHCNPSTYITGRCGRGKVVPALIAGVFVGAFLMAVLTLLCYCIRRRSMCLKGQMSAKRLLSEAAGNSSVTLYPYKEIERATNGFSEKQRLGTGAFGTVYAGRVHEDEWVAVKRIKYRDHNSIDQVMNEIKLLSSVSHPNLVRLLGCCIEEGQQILVYEFMPNGTLSQHLQRERGNGLPWTTRLTIAAETSRAIAYLHSSVHPPIYHRDIKSSNILLDHGFKSKVADFGLSRLGMTEISHVSTAPQGTPGYVDPQYHQNFYLSDKSDVYSFGVVLVEIITALKVVDFTRPQSEVNLAALAIDRIGRGAVDELIDPFLEPHRDAWTLYSIHKVAELAFRCLAFHSDMRPSMTEVAEELECIRRSGWTSMEEHFCAASSAGSACSSPRSVSERSISGITMKKAALLAGLGSQRLVIPPENNHHKDYLPPVEEVMDSSPVSIQDPWLSEQSSPSTNSLLGNVAR 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9406711 9414847 + Maker00013390 Lcy1g1044 622956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1044 864 ProSitePatterns Protein kinases ATP-binding region signature. 494 516 IPR017441 GO:0005524(InterPro)
Lcy1g1044 864 SUPERFAMILY Protein kinase-like (PK-like) 468 761 IPR011009 -
Lcy1g1044 864 MobiDBLite consensus disorder prediction 841 864 - -
Lcy1g1044 864 FunFam Wall-associated receptor kinase-like 20 564 773 - -
Lcy1g1044 864 Gene3D Phosphorylase Kinase; domain 1 449 563 - -
Lcy1g1044 864 Gene3D Transferase(Phosphotransferase) domain 1 564 779 - -
Lcy1g1044 864 FunFam Wall-associated receptor kinase-like 14 455 563 - -
Lcy1g1044 864 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 199 850 IPR044652 GO:0004672(InterPro)|GO:0016301(PANTHER)|GO:0016310(PANTHER)
Lcy1g1044 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 608 620 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1044 864 Pfam Protein kinase domain 489 758 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1044 864 SMART serkin_6 488 763 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1044 864 MobiDBLite consensus disorder prediction 839 864 - -
Lcy1g1044 864 ProSiteProfiles Protein kinase domain profile. 488 763 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1246 Lcy-Chr12:26058308 Lcy1g1044 Lcy-Chr1:9406711 6.82E-28 dispersed
Lcy13g2018 Lcy-Chr13:39145457 Lcy1g1044 Lcy-Chr1:9406711 1.87E-189 dispersed
Lcy1g1044 Lcy-Chr1:9406711 Lcy2g0422 Lcy-Chr2:3532563 6.16E-86 dispersed
Lcy1g1044 Lcy-Chr1:9406711 Lcy3g0133 Lcy-Chr3:3385088 1.64E-89 transposed
Lcy1g1044 Lcy-Chr1:9406711 Lcy10g2238 Lcy-Chr10:46187843 2.25E-88 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65653 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1044 - - - 0.0