Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1061 ATGGCGAATGAGTTTGGAGAATCAACAAGCGTGCCACATCAAAATCCCTCTTGGTCCAGTAATAGTGACAGCACTAACAATGATACTGGTGATTTTGAATGCAATATTTGCTTCGAGTTAGCTCAAGATCCAATTATCACTCTTTGTGGCCACCTCTTTTGCTGGCCCTGTTTGTATAGATGGCTGCATCATCACTCGCAATGTCAAGAATGTCCTGTTTGTAAGGCTCTTGTTCAGGAGGAGAAGTTGGTTCCTCTTTATGGTAGGGGCAAGGTACCGTCTGACCCGAGATTAAATAGTTATCCTGGTATCGATGTTCCGAGTCGCCCTGCTGGGCAAAGGCCTCAAACAGCACCTCCCCCTGTTGCTAATGACTTTGCAAACTATGGTTTTGGATTCACTGGTGGATTTATGCCGATGGCAACAGCAAGGATTGGAAACTTCACTTTGGCTACTGCTTTTGGTGGTCTGATCCCATCTTTATTCAACATCCAGTTTCATGGATTTCCTGATGCCACAGTTTATGGAACTACTTCTGGTTACCCCTATGCATTCAACACATTCCATGGGGGTCATGGCCACCATTTTCCACAACCACCGAGCCGAGGTCAGCATGCTGATAATGTACTGAAAAACCTCCTTATACTCGTTGGTGTCTTTGTAATTCTTGCCTTGCTTTGGTGGTTTGATCTTTGTGTGTTTACATTGGCTTTTAGTTCTGAACTGAAGCTTGGTTTGCTGTCCTAG 747 44.71 MANEFGESTSVPHQNPSWSSNSDSTNNDTGDFECNICFELAQDPIITLCGHLFCWPCLYRWLHHHSQCQECPVCKALVQEEKLVPLYGRGKVPSDPRLNSYPGIDVPSRPAGQRPQTAPPPVANDFANYGFGFTGGFMPMATARIGNFTLATAFGGLIPSLFNIQFHGFPDATVYGTTSGYPYAFNTFHGGHGHHFPQPPSRGQHADNVLKNLLILVGVFVILALLWWFDLCVFTLAFSSELKLGLLS 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9577335 9578665 - Maker00012134 Lcy1g1061 622973
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1061 248 MobiDBLite consensus disorder prediction 94 118 - -
Lcy1g1061 248 Pfam Ring finger domain 33 75 IPR001841 -
Lcy1g1061 248 CDD RING-HC_AtRMA-like 32 76 - -
Lcy1g1061 248 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 88 IPR013083 -
Lcy1g1061 248 SMART ring_2 34 74 IPR001841 -
Lcy1g1061 248 ProSiteProfiles Zinc finger RING-type profile. 34 75 IPR001841 -
Lcy1g1061 248 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 88 - -
Lcy1g1061 248 SUPERFAMILY RING/U-box 30 87 - -
Lcy1g1061 248 ProSitePatterns Zinc finger RING-type signature. 49 58 IPR017907 -
Lcy1g1061 248 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 12 220 IPR045103 GO:0005783(InterPro)|GO:0006511(PANTHER)|GO:0006511(InterPro)|GO:0044390(PANTHER)|GO:0061630(PANTHER)|GO:0061630(InterPro)|GO:0071712(PANTHER)
Lcy1g1061 248 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g2012 Lcy-Chr13:39097005 Lcy1g1061 Lcy-Chr1:9577335 9.33E-89 dispersed
Lcy1g1061 Lcy-Chr1:9577335 Lcy5g0587 Lcy-Chr5:6701722 4.33E-26 dispersed
Lcy1g1061 Lcy-Chr1:9577335 Lcy4g0643 Lcy-Chr4:7691493 1.16E-27 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1061 K10666 - csv:101205026 448.743