Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g1075 | ATGGCTTCCATCGACTTTGCAGCCATCCTTTTTTCCTTTATACCCTTCCTATTCATCATTTTCTCTCAAGTAATTTCGAGGTGGAATTTTGGTGGAATTGCTCCTTGGAACTGGGCCATCGTGGGTATGACTCCAACTGTTATTTGCCATATCCACCGAGTTCACGATCGTATAACTGAAGTCTTACACGAAGTTGGTTCCACTTTCTACTTCAAAGGCGTCTGGTTTTCAGGTCTAGACTTAATATTTACAGTTGACCCTTCAAATATACACCATATTTTGAGTGCCAACTTCGAACGCTATCCAAAAGGGCCTGATTTCAAGTACATTTTTGACGTTTTGGGAGATGGGATTTTCAACTCCGATTCAGACGTTTGGAAGAACCAACGCAAGACCGCTCATTCCTTGGTCCGCCATGACAATTTTCTTCAATTCTTGGAGAAGATCACGATGGAGAAAGTGAAGGAAGGGCTGGTTCCGGTGCTTGAAAGCGTTTGTGAAAATGGGTCGGTGTTGGATTTGCAAGATCTGTTCCAGAGATTTTCGTTTGATTCAACTTGTATGTTGGTCACTGGCTTCGACCTCCATAGTTTATCTCTTGATTTCCCTCAAGTTCCGTTCTCAAAGGCTATGGATGATGTGGAGCAAGTGATTCTTCTTCGCCATTTTTTCCCCAAGAGCTTGTGGGAGTTGCAAAAGAAATTCCAAATTGGACAAGCCAAGAGGCTGAAAGAAGCTTGGGAAATCATAGATCAAACCATTGCAAAATTGATAGCCTCCAAAAGAGAAAGCTTGAAGCTGAAGGAAGAGCCAGAAGGAGGAGTTGATTTGATCACATCATATATTACAAACAAAGATAATGTTGAATTTGGAAACAACGATAAGTTCTTGAGAGACACCGTTTTCAATTTCATGATTGCTGGTCGGGACACTCTAAGTTCAGCTCTCTCATGGTTTTTCTTTTGTCTTTCAAACAATCCAATGGTTGAAGCAAAGATAAGAGAAGAGCTCAAGGCAACGATCCCAACAAACGAAGCTCAAGATCAATGGCGGGTGTTTTCCATTAAAGAGGTAGATAAATTAGTTTACTTTCATGGAGCTTTATGTGAAGCACTTAGACTTTATCCTCCAGTTCCATTTCAACATAAAGTTCCTTCGCAACCTGACATCCTTCCATCAGGTCATCATGTCAATCCCAAAACAAAGATTTTGTTTTCGTTATATGCATTGGGAAGAAGGAGTGATGTGTGGGGAAAAGATTGCATGGAGTTCAAGCCAGAGAGATGGATTTCAGAAAAAGGAAGTATAAAACATGTGCCATCTTACAAATTCTTGGCCTTCAATGCAGGGCCGAGGACTTGCTTGGGAAAACAAGTGGCTTTTACTGAGTTGAAGATAGTTGCAGCTGCCATTATTCATAACTACAACATTATTCAACAGATTGGGCATGAGGTTGTTCCAAATACTTCCATTATTCTTCACATGAAGAATGGATTCAAAGTCAGGGTTACAAAGAGATGGACTACTTGA | 1530 | 40.78 | MASIDFAAILFSFIPFLFIIFSQVISRWNFGGIAPWNWAIVGMTPTVICHIHRVHDRITEVLHEVGSTFYFKGVWFSGLDLIFTVDPSNIHHILSANFERYPKGPDFKYIFDVLGDGIFNSDSDVWKNQRKTAHSLVRHDNFLQFLEKITMEKVKEGLVPVLESVCENGSVLDLQDLFQRFSFDSTCMLVTGFDLHSLSLDFPQVPFSKAMDDVEQVILLRHFFPKSLWELQKKFQIGQAKRLKEAWEIIDQTIAKLIASKRESLKLKEEPEGGVDLITSYITNKDNVEFGNNDKFLRDTVFNFMIAGRDTLSSALSWFFFCLSNNPMVEAKIREELKATIPTNEAQDQWRVFSIKEVDKLVYFHGALCEALRLYPPVPFQHKVPSQPDILPSGHHVNPKTKILFSLYALGRRSDVWGKDCMEFKPERWISEKGSIKHVPSYKFLAFNAGPRTCLGKQVAFTELKIVAAAIIHNYNIIQQIGHEVVPNTSIILHMKNGFKVRVTKRWTT | 509 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9736052 | 9737581 | - | Maker00012494 | Lcy1g1075 | 622987 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g1075 | 509 | Pfam | Cytochrome P450 | 52 | 482 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PANTHER | CYTOCHROME P450 | 20 | 499 | - | - | |
| Lcy1g1075 | 509 | Gene3D | Cytochrome P450 | 34 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 447 | 456 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lcy1g1075 | 509 | SUPERFAMILY | Cytochrome P450 | 35 | 506 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PRINTS | P450 superfamily signature | 454 | 465 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PRINTS | P450 superfamily signature | 307 | 324 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PRINTS | P450 superfamily signature | 445 | 454 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | CDD | CYP86A | 69 | 499 | - | - | |
| Lcy1g1075 | 509 | PRINTS | E-class P450 group I signature | 444 | 454 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PRINTS | E-class P450 group I signature | 296 | 313 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PRINTS | E-class P450 group I signature | 316 | 342 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1075 | 509 | PRINTS | E-class P450 group I signature | 454 | 477 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g1075 | Lcy-Chr1:9736052 | Lcy1g1083 | Lcy-Chr1:9836176 | 6.35E-230 | dispersed | |
| Lcy1g1074 | Lcy-Chr1:9703474 | Lcy1g1075 | Lcy-Chr1:9736052 | 1.13e-311 | tandem | |
| Lcy1g1075 | Lcy-Chr1:9736052 | Lcy1g1076 | Lcy-Chr1:9750758 | 4.09e-312 | tandem |
Pathway information