Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g1076 | ATGGCTTCCATTGCCATTCTGATCTCCATCCTTCTCCCTTCCTTACCCTTCATTTTCTTCATCTTCTCTTTCTTTCTCAGATGGAACCCTTATGGGATTCCATGGAATTGGCCTCTTTTCGGAATGATCCCTACACTCGCCTTCCATATCCACCGCATTCATGATCGTGTAGCTGAAATCTTACACCAATCTTCTTCCACTTTCTTCTTCCATGGCGTTTGGTTCGCCGATATTGACTTCTTGCTCACAGCCGACCCTTCAAATATTCACCATATAATGAGTGCCAACTTTCAACGATATCCCAAAGGCCCCGATTTCAAGTATATTTTTGACGTTTTGGGAGATGGGATTTTCAACTCCGACTCTGATTCGTGGAAGAACCAACGGAGAACCGCTCATGCTTTGGTTCGTCATCAGAAGTTTCTTCAATTCTTGGAGAAAATTGCGATGAAGAAGGTCGAGGAAGGGTTGGTTCCGGTGCTTGAAAGTGTTTGTGAAAATGGGTCGGCGTTGGATTTGCAAGATTTGTTTCAGAGATTTTCGTTTGATTCCACTTGTATGTTGGTCACTGGCTTCGATCTCCATAGTTTATCTCTTGATTCCCCTCAAGTTCCGTTTTCCAAAGCCATGGATGACGTCGAGGAAGTGATTTTTCTTCGACACTTTTTTCCTAGAAGAATTTGGGAATTGCAAAAGAAACTCCAATTTGGACCAGCCAAGAGATTGAACGAAGCTTGGAAGATCATAGATGAAACCATCGCAAAATTGATGGCCTCCAAAAGAGAAAGCTTGAAGCTGAAGCTGAAGGAAGAGCCAGAAGAAGGAGGAGTTGATTTGATCACATCGTATATTGTAAACAAAGATGATGATGAATTTGGAAACAATGATAAGTTCTTGAGAGACACCGTTTTGAATTTCATGATTGCTGGTCGGGACACTCTAAGTTCAGCTCTCTCATGGTTTTTCTTTTGTCTTTCAAACAATCCAATCGTTGAAGCAAAGATAAGAGAAGAGCTCAAAACAATCATCCCACCAAACGAAGCTCAAGATCAATGGAGAGTATTTTCAATTGAAGAGCTGAAGAATCTAGTTTACTTTCATGGAGCCTTATGTGAAACACTTAGACTTTATCCTCCAGTTCCATTTCAACATAAAGTTCCTTCGCAACCTGACATCCTTCCATCAGGTCATCATGTCAATCCCAAAACAAAGATTTTGTTTTCGTTATACGCATTGGGAAGAACGAGCGAAGTGTGGGGAAAAGACTGCATGGAGTTCAAGCCAGAGAGATGGATTTCAGAAAAAGGAAGTATCATACATGTGCCATCTTACAAATTCTTGGCCTTCAACGCAGGGCCAAGGACTTGCTTGGGAAAAGAAGTGGCTTTCGTTGAGATGAAAATAGTTGCCGCTGCCATTATTCACAACTACAACATTATTCAACAGATTGGGCATAAGGTTGTTCCAAGTGCTTCTATTATTCTTCACATGAAGCATGGATTCAAAGTCAAGATTTCAAGAAGATGGTCTTGA | 1533 | 41.29 | MASIAILISILLPSLPFIFFIFSFFLRWNPYGIPWNWPLFGMIPTLAFHIHRIHDRVAEILHQSSSTFFFHGVWFADIDFLLTADPSNIHHIMSANFQRYPKGPDFKYIFDVLGDGIFNSDSDSWKNQRRTAHALVRHQKFLQFLEKIAMKKVEEGLVPVLESVCENGSALDLQDLFQRFSFDSTCMLVTGFDLHSLSLDSPQVPFSKAMDDVEEVIFLRHFFPRRIWELQKKLQFGPAKRLNEAWKIIDETIAKLMASKRESLKLKLKEEPEEGGVDLITSYIVNKDDDEFGNNDKFLRDTVLNFMIAGRDTLSSALSWFFFCLSNNPIVEAKIREELKTIIPPNEAQDQWRVFSIEELKNLVYFHGALCETLRLYPPVPFQHKVPSQPDILPSGHHVNPKTKILFSLYALGRTSEVWGKDCMEFKPERWISEKGSIIHVPSYKFLAFNAGPRTCLGKEVAFVEMKIVAAAIIHNYNIIQQIGHKVVPSASIILHMKHGFKVKISRRWS | 510 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 9750758 | 9752290 | + | Maker00012857 | Lcy1g1076 | 622988 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g1076 | 510 | SUPERFAMILY | Cytochrome P450 | 24 | 508 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | Gene3D | Cytochrome P450 | 21 | 509 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PRINTS | P450 superfamily signature | 368 | 379 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PRINTS | P450 superfamily signature | 456 | 467 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PRINTS | P450 superfamily signature | 309 | 326 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PRINTS | P450 superfamily signature | 447 | 456 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | CDD | CYP86A | 68 | 501 | - | - | |
| Lcy1g1076 | 510 | Pfam | Cytochrome P450 | 34 | 483 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PANTHER | CYTOCHROME P450 | 20 | 501 | - | - | |
| Lcy1g1076 | 510 | PRINTS | E-class P450 group I signature | 298 | 315 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PRINTS | E-class P450 group I signature | 456 | 479 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PRINTS | E-class P450 group I signature | 318 | 344 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | PRINTS | E-class P450 group I signature | 446 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1076 | 510 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 449 | 458 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g1074 | Lcy-Chr1:9703474 | Lcy1g1076 | Lcy-Chr1:9750758 | 0 | dispersed | |
| Lcy1g1076 | Lcy-Chr1:9750758 | Lcy1g1083 | Lcy-Chr1:9836176 | 1.08E-240 | dispersed | |
| Lcy1g1075 | Lcy-Chr1:9736052 | Lcy1g1076 | Lcy-Chr1:9750758 | 4.09e-312 | tandem | |
| Lcy1g1076 | Lcy-Chr1:9750758 | Lcy1g1077 | Lcy-Chr1:9769473 | 3.96E-233 | tandem |
Pathway information