Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1076 ATGGCTTCCATTGCCATTCTGATCTCCATCCTTCTCCCTTCCTTACCCTTCATTTTCTTCATCTTCTCTTTCTTTCTCAGATGGAACCCTTATGGGATTCCATGGAATTGGCCTCTTTTCGGAATGATCCCTACACTCGCCTTCCATATCCACCGCATTCATGATCGTGTAGCTGAAATCTTACACCAATCTTCTTCCACTTTCTTCTTCCATGGCGTTTGGTTCGCCGATATTGACTTCTTGCTCACAGCCGACCCTTCAAATATTCACCATATAATGAGTGCCAACTTTCAACGATATCCCAAAGGCCCCGATTTCAAGTATATTTTTGACGTTTTGGGAGATGGGATTTTCAACTCCGACTCTGATTCGTGGAAGAACCAACGGAGAACCGCTCATGCTTTGGTTCGTCATCAGAAGTTTCTTCAATTCTTGGAGAAAATTGCGATGAAGAAGGTCGAGGAAGGGTTGGTTCCGGTGCTTGAAAGTGTTTGTGAAAATGGGTCGGCGTTGGATTTGCAAGATTTGTTTCAGAGATTTTCGTTTGATTCCACTTGTATGTTGGTCACTGGCTTCGATCTCCATAGTTTATCTCTTGATTCCCCTCAAGTTCCGTTTTCCAAAGCCATGGATGACGTCGAGGAAGTGATTTTTCTTCGACACTTTTTTCCTAGAAGAATTTGGGAATTGCAAAAGAAACTCCAATTTGGACCAGCCAAGAGATTGAACGAAGCTTGGAAGATCATAGATGAAACCATCGCAAAATTGATGGCCTCCAAAAGAGAAAGCTTGAAGCTGAAGCTGAAGGAAGAGCCAGAAGAAGGAGGAGTTGATTTGATCACATCGTATATTGTAAACAAAGATGATGATGAATTTGGAAACAATGATAAGTTCTTGAGAGACACCGTTTTGAATTTCATGATTGCTGGTCGGGACACTCTAAGTTCAGCTCTCTCATGGTTTTTCTTTTGTCTTTCAAACAATCCAATCGTTGAAGCAAAGATAAGAGAAGAGCTCAAAACAATCATCCCACCAAACGAAGCTCAAGATCAATGGAGAGTATTTTCAATTGAAGAGCTGAAGAATCTAGTTTACTTTCATGGAGCCTTATGTGAAACACTTAGACTTTATCCTCCAGTTCCATTTCAACATAAAGTTCCTTCGCAACCTGACATCCTTCCATCAGGTCATCATGTCAATCCCAAAACAAAGATTTTGTTTTCGTTATACGCATTGGGAAGAACGAGCGAAGTGTGGGGAAAAGACTGCATGGAGTTCAAGCCAGAGAGATGGATTTCAGAAAAAGGAAGTATCATACATGTGCCATCTTACAAATTCTTGGCCTTCAACGCAGGGCCAAGGACTTGCTTGGGAAAAGAAGTGGCTTTCGTTGAGATGAAAATAGTTGCCGCTGCCATTATTCACAACTACAACATTATTCAACAGATTGGGCATAAGGTTGTTCCAAGTGCTTCTATTATTCTTCACATGAAGCATGGATTCAAAGTCAAGATTTCAAGAAGATGGTCTTGA 1533 41.29 MASIAILISILLPSLPFIFFIFSFFLRWNPYGIPWNWPLFGMIPTLAFHIHRIHDRVAEILHQSSSTFFFHGVWFADIDFLLTADPSNIHHIMSANFQRYPKGPDFKYIFDVLGDGIFNSDSDSWKNQRRTAHALVRHQKFLQFLEKIAMKKVEEGLVPVLESVCENGSALDLQDLFQRFSFDSTCMLVTGFDLHSLSLDSPQVPFSKAMDDVEEVIFLRHFFPRRIWELQKKLQFGPAKRLNEAWKIIDETIAKLMASKRESLKLKLKEEPEEGGVDLITSYIVNKDDDEFGNNDKFLRDTVLNFMIAGRDTLSSALSWFFFCLSNNPIVEAKIREELKTIIPPNEAQDQWRVFSIEELKNLVYFHGALCETLRLYPPVPFQHKVPSQPDILPSGHHVNPKTKILFSLYALGRTSEVWGKDCMEFKPERWISEKGSIIHVPSYKFLAFNAGPRTCLGKEVAFVEMKIVAAAIIHNYNIIQQIGHKVVPSASIILHMKHGFKVKISRRWS 510
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 9750758 9752290 + Maker00012857 Lcy1g1076 622988
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1076 510 SUPERFAMILY Cytochrome P450 24 508 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 Gene3D Cytochrome P450 21 509 IPR036396 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PRINTS P450 superfamily signature 368 379 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PRINTS P450 superfamily signature 309 326 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 CDD CYP86A 68 501 - -
Lcy1g1076 510 Pfam Cytochrome P450 34 483 IPR001128 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PANTHER CYTOCHROME P450 20 501 - -
Lcy1g1076 510 PRINTS E-class P450 group I signature 298 315 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PRINTS E-class P450 group I signature 318 344 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro)
Lcy1g1076 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506(InterPro)|GO:0016705(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1074 Lcy-Chr1:9703474 Lcy1g1076 Lcy-Chr1:9750758 0 dispersed
Lcy1g1076 Lcy-Chr1:9750758 Lcy1g1083 Lcy-Chr1:9836176 1.08E-240 dispersed
Lcy1g1075 Lcy-Chr1:9736052 Lcy1g1076 Lcy-Chr1:9750758 4.09e-312 tandem
Lcy1g1076 Lcy-Chr1:9750758 Lcy1g1077 Lcy-Chr1:9769473 3.96E-233 tandem
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1076 - - - 0.0