Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1097 ATGGGATCTCCGGCTTCCGACGAGATAATGGTGAACCAGTTGGTGAGTCTACTGCAAGCCGAGCACGCCGCCGCCGCTATTACCACCAATTTCAATTTCTTTTCATTCCCTGAAAACACCACCGCCGTCGACCTCCACCAACAATCATCCCTGAAACCCTTCTTCTGTACGAGTACGGAGCCTCCTCATTATTTGTCCCAACAATCTCAGCCGCCCCTTCTCTTTTCTCTCAAGCCGCCCTCTCTTCTTCACTTTCCTTCCTCCCTCCCCTCCACCACCGCCACCTCCTCCGATCTCTGGGATGTGGGGGAGGGGTTTGTGAGGGGGAGAAATGGGAGCGGAGACAGCGGTGGCGACGAGGACCGTAAGCCGCCGCGGTTGAGGGTGTCGGCGACGGCGAAGATGAAGAGGATAAAGGGGAGGAAGAAAGTGAGAGAGCCAAGATTCTGCTTCAAAACCATGAGCGATGTGGATGTTCTTGACGATGGTTACAAATGGAGAAAGTACGGCCAAAAAGTTGTTAAGAACACCCTCCATCCCAGGAGTTACTATCGTTGCACACAGGATAATTGTAGGGTAAAGAAGCGAGTAGAAAGATTAGCGGAAGATCCAAGGATGGTGATAACGACCTATGAAGGAAGACACGCTCATTCACCATCTCATGATAATTTAGAAGAGACAATGGGTCAGTTACCGTCGGGTCACTTTAACAATTTCTTCTGGTAG 726 50.96 MGSPASDEIMVNQLVSLLQAEHAAAAITTNFNFFSFPENTTAVDLHQQSSLKPFFCTSTEPPHYLSQQSQPPLLFSLKPPSLLHFPSSLPSTTATSSDLWDVGEGFVRGRNGSGDSGGDEDRKPPRLRVSATAKMKRIKGRKKVREPRFCFKTMSDVDVLDDGYKWRKYGQKVVKNTLHPRSYYRCTQDNCRVKKRVERLAEDPRMVITTYEGRHAHSPSHDNLEETMGQLPSGHFNNFFW 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 9997992 10000147 + Maker00012439 Lcy1g1097 623009
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1097 241 Gene3D WRKY domain 147 213 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g1097 241 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g1097 241 SUPERFAMILY WRKY DNA-binding domain 152 219 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g1097 241 Pfam WRKY DNA -binding domain 161 217 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g1097 241 SMART WRKY_cls 160 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lcy1g1097 241 MobiDBLite consensus disorder prediction 107 127 - -
Lcy1g1097 241 FunFam WRKY transcription factor 57 146 220 - -
Lcy1g1097 241 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 130 222 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g2138 Lcy-Chr11:44925625 Lcy1g1097 Lcy-Chr1:9997992 1.68E-47 dispersed
Lcy13g2200 Lcy-Chr13:40909480 Lcy1g1097 Lcy-Chr1:9997992 8.67E-30 dispersed
Lcy1g1097 Lcy-Chr1:9997992 Lcy8g0779 Lcy-Chr8:28527740 6.19E-46 dispersed
Lcy1g1097 Lcy-Chr1:9997992 Lcy8g0308 Lcy-Chr8:9337545 1.62E-65 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19589 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1097 - - - 0.0