Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1098 ATGATACCCTTTTGCCCATCTTCTTCAAAATCCTTTCTCAGGCTCTTTTTGTTCCTTTTCTCTCTCACTCTTCTCTCGCTCTCTGCTTTCTCTGTGACGCCTTCGCCTTCGCCTTCACACAGAGATACCCAGCAACTGATTTCCTTCAAATCTTCGCTTCCCAATCCGACCGTTCTTCAAAACTGGGTTTCCAATGGCGACGCGTGTTCGTTTCCCGGCATTATTTGCAAGGAAACCAGAGTTTCCGCAATAGACTTGAGCTTCTTGTCTCTGAGCTCTAATTTCAGCCATGTGTTCCCTTTGCTTGCGGGGCTCGACCATTTGGAATCGCTTTCTCTCAAATCTACTAACCTCACTGGCTCCATTTCTCTGCCCTCTGGATTCAAGTGTAGCTCTCTGCTTTCGTCTGTAGATCTGTCACTCAATGGCTTGTTTGGCTCGGTTTCTGATGTCTCTAACTTGGGGTTTTGCTCCAATGTCAAGTCGCTTAATCTGTCCTTTAACTCGTTTGATTTTCCCCCGAAAGACTCCGCCCCCGGATTGAAGCTCGATTTGCAGGTTCTCGATCTTTCTTCCAACCGGATTGTTGGGTCGAAGTTGGTTCCGTGGATTTTCTCTGCTGGGTGTGGTAATTTGCAGTACTTGGCATTGAAGGGCAATAAAATCAGCGGTGAGATTAATCTCTCCGCCTGTAATAAACTCGAGCATTTGGATATTTCCGGCAACAATTTCTCGGTGGGTATTCCGCCGTTGGGGGATTGCTCTGTTTTGGAGTATCTTGATATCTCCGGCAATAAGTTCACCGGCGACGTTGGACATGCTCTGTCGTCTTGTCTGCAACTCAGCTTCTTGAATCTCTCGAGCAACCAGTTTGGAGGTCCAATCCCTTCATTTGCATCGTCGAATTTGTGGTTTCTTTCGCTTGCTAACAACGATTTCCAAGGGGAGATTCCTGTAAGTATTGCAGATTCGTGTTCTAGTTTGGTAGAGCTCGATCTTTCTTCTAATAGTTTGATTGGGGCTGTGCCTGCTGCTTTGGGGTCTTGTTTTTCGTTGGAAACTTTGGACATTTCGAAAAATAACCTCTCTGGTGAGCTCCCCATTGCTGTTTTTGCTAAAATGAGTAGTCTCAAGAGACTCTCTGTCTCGGATAACAAGTTTTTTGGGGTTTTGTCGGATTCTCTGTCTCAACTCACCACTTTGAACTCTTTGGATCTGAGTTCTAATAACTTCTCTGGGTCGATTCCGGCCGGGCTCTGTAACGACCCTAATAACAGCTTGAAAGAATTGTTTCTTCAGAACAATTGGTTGACGGGTCGAATCCCTGCAACTATTAGTAACTGTTCTCAGCTGGTTTCTCTGGATTTGAGCTTCAACTTTCTGAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCATCGGATTTTAAGAACTTTCAGGGGCTTGAGAATCTAATCCTGGATTTCAATGAGCTCACCGGGACGATTCCTTCTGGGTTAAGCAATTGCACCAACTTGAACTGGATTTCGTTGTCGAACAACCGGTTGAGCGGAGAGATTCCCACCTGGATTGGGCACCTACCCAACCTTGCCATCCTTAAACTCAGCAACAACTCGTTCTACGGTAGGATTCCTCCGGAGTTGGGCGATTGTCGGAGCTTGATCTGGCTTGACCTCAATACCAATAACTTGAATGGAACGATCCCTCCGGAGCTGTTTCGTCAATCGGGTAACATTGCTGTTAACTTTATCACCGGGAAGTCTTATGCTTACATTAAGAATGATGGTAGTAAGCAGTGCCATGGAGCTGGAAATTTGCTTGAGTTTGCTGGGATAAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCCTGCAATTTCACCAGGGTTTATAAGGGAATGACTCAGCCGACGTTTAACCATAACGGTTCGATGATCTTTCTCGATCTTTCGCACAATATGTTGTCTGGTAGTATTCCCAAGGAGATTGGTTCTACAAACTATCTCTACATATTGGATTTGGGCCACAACAGGCTCTCCGGAGCCATTCCGCAGGAGCTCGGCGACTTGACGAAACTGAACATTCTTGATCTCTCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTATCAAACAATCATCTCAATGGTTCAATACCCGAATCAGCTCAGTTCGAAACGTTCCCGGCATCTGGTTTTGCAAATAATTCTGGCCTCTGTGGGTACCCTCTCCCTACATGTGGGGTTGATTCAGCAGCTAATGCAAATGCTCAGCATCAAAGATCTCATAGGAAACAGGCATCGCTTGCAGGGAGCGTCGCAATGGGGTTACTCTTCTCCCTCTTCTGTATATTCGGTCTGATTATAGTCGTTATTGAGATGAGGAAGAGAAGGAAAAAGAAGGATTCTACTCTTGATTCTTATGTCGACAGTCGTTCCCAATCTGGCACGACGACGGCCGTTAACTGGAAGCTAACCAGCACCCGTGAAGCATTGAGTATCAATCTTGCGACGTTCGAGAAGCCACTTCGGAAGTTGACATTTGCAGATCTTCTCGACGCGACGAATGGCTTCCACAATGATAGCCTGATTGGTAAAGGTGGTTTCGGCGACGTATACAAGGCTCAATTGAAGGATGGAAGCATTGTAGCTATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATAGGGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTGGTACCTCTTCTGGGCTACTGCAAAGTCGGAGAAGAACGGCTTCTCGTGTACGAGTACATGAAATACGGAAGCTTGGAAGACGTTTTACACGACCAGAAGAAGGGCGGGATCAAACTGAATTGGGCTGCAAGAAGGAAGATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTCTTATTGGATGAGAACTTGGAAGCTAGAGTCTCAGATTTTGGAATGGCAAGGCTGATGAGTGCCATGGACACCCATTTGAGTGTCAGCACATTAGCTGGAACACCCGGTTACGTCCCTCCCGAATATTACCAGAGCTTCCGATGTTCGACAAAAGGCGATGTTTACAGTTATGGTGTCGTCATGCTCGAGCTCCTAACAGGAAAGCGACCTACAGACTCTGCCGATTTTGGGGACAACAATCTTGTCGGATGGGTTAAACAACATGCCAAGTTGGACCTATCCGAAGTTTTCGACCCCGAGCTCATGAAGGAGGATCCAAGCCTCAAGATAGAGCTTTTAGAACACTTGAAGGTAGCTGTTGCTTGCTTAGATGATAGGTCATGGCGGCGTCCAACGATGATCCAAGTGATGACGATGTTCAAGGAAATCCAAGCAGGGTCAGGGATGGATTCGCAATCTACAATCGGAACCGACAATGGAGGATTCAGTGTCGACATGGTAGACATGAGCTTAAAGGAAGTACCAGAAGGCAAGTGA 3597 46.4 MIPFCPSSSKSFLRLFLFLFSLTLLSLSAFSVTPSPSPSHRDTQQLISFKSSLPNPTVLQNWVSNGDACSFPGIICKETRVSAIDLSFLSLSSNFSHVFPLLAGLDHLESLSLKSTNLTGSISLPSGFKCSSLLSSVDLSLNGLFGSVSDVSNLGFCSNVKSLNLSFNSFDFPPKDSAPGLKLDLQVLDLSSNRIVGSKLVPWIFSAGCGNLQYLALKGNKISGEINLSACNKLEHLDISGNNFSVGIPPLGDCSVLEYLDISGNKFTGDVGHALSSCLQLSFLNLSSNQFGGPIPSFASSNLWFLSLANNDFQGEIPVSIADSCSSLVELDLSSNSLIGAVPAALGSCFSLETLDISKNNLSGELPIAVFAKMSSLKRLSVSDNKFFGVLSDSLSQLTTLNSLDLSSNNFSGSIPAGLCNDPNNSLKELFLQNNWLTGRIPATISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFKNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPTWIGHLPNLAILKLSNNSFYGRIPPELGDCRSLIWLDLNTNNLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNRLSGAIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPTCGVDSAANANAQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSTLDSYVDSRSQSGTTTAVNWKLTSTREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGKGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLSEVFDPELMKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDNGGFSVDMVDMSLKEVPEGK 1198
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10018907 10022503 - Maker00012942 Lcy1g1098 623010
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1098 1198 FunFam Serine/threonine-protein kinase BRI1-like 1 601 658 - -
Lcy1g1098 1198 Gene3D Ribonuclease Inhibitor 46 777 IPR032675 -
Lcy1g1098 1198 SMART serkin_6 888 1160 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1098 1198 SUPERFAMILY RNI-like 68 376 - -
Lcy1g1098 1198 Gene3D - 599 659 - -
Lcy1g1098 1198 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 301 1163 IPR050647 -
Lcy1g1098 1198 Pfam Brassinosteroid receptor island domain 594 658 IPR045381 -
Lcy1g1098 1198 SUPERFAMILY Protein kinase-like (PK-like) 874 1164 IPR011009 -
Lcy1g1098 1198 Pfam Leucine rich repeat 687 745 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine rich repeat 351 411 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine rich repeat 498 556 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 424 604 - -
Lcy1g1098 1198 Pfam Protein kinase domain 888 1157 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1098 1198 ProSitePatterns Protein kinases ATP-binding region signature. 894 917 IPR017441 GO:0005524(InterPro)
Lcy1g1098 1198 FunFam serine/threonine-protein kinase BRI1-like 2 849 963 - -
Lcy1g1098 1198 Gene3D Transferase(Phosphotransferase) domain 1 964 1165 - -
Lcy1g1098 1198 ProSiteProfiles Protein kinase domain profile. 888 1163 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1098 1198 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1010 1022 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1098 1198 CDD STKc_IRAK 894 1163 - -
Lcy1g1098 1198 FunFam Brassinosteroid LRR receptor kinase 964 1165 - -
Lcy1g1098 1198 Gene3D Phosphorylase Kinase; domain 1 848 963 - -
Lcy1g1098 1198 SMART LRR_typ_2 544 568 IPR003591 -
Lcy1g1098 1198 SMART LRR_typ_2 325 349 IPR003591 -
Lcy1g1098 1198 SMART LRR_typ_2 398 422 IPR003591 -
Lcy1g1098 1198 SMART LRR_typ_2 569 592 IPR003591 -
Lcy1g1098 1198 SMART LRR_typ_2 708 731 IPR003591 -
Lcy1g1098 1198 SMART LRR_typ_2 732 755 IPR003591 -
Lcy1g1098 1198 SMART LRR_typ_2 496 520 IPR003591 -
Lcy1g1098 1198 SMART LRR_typ_2 374 397 IPR003591 -
Lcy1g1098 1198 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 655 777 - -
Lcy1g1098 1198 SUPERFAMILY RNI-like 273 588 - -
Lcy1g1098 1198 Pfam Leucine rich repeat N-terminal domain 41 76 IPR013210 -
Lcy1g1098 1198 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 184 423 - -
Lcy1g1098 1198 Pfam Leucine Rich Repeat 451 472 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine Rich Repeat 426 448 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine Rich Repeat 327 349 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine Rich Repeat 281 298 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine Rich Repeat 665 683 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine Rich Repeat 233 250 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 Pfam Leucine Rich Repeat 257 278 IPR001611 GO:0005515(InterPro)
Lcy1g1098 1198 PRINTS Leucine-rich repeat signature 708 721 - -
Lcy1g1098 1198 PRINTS Leucine-rich repeat signature 352 365 - -
Lcy1g1098 1198 SUPERFAMILY L domain-like 654 776 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1582 Lcy-Chr10:40180458 Lcy1g1098 Lcy-Chr1:10018907 5.04E-157 dispersed
Lcy10g1970 Lcy-Chr10:43780799 Lcy1g1098 Lcy-Chr1:10018907 6.52E-63 dispersed
Lcy1g0648 Lcy-Chr1:5554959 Lcy1g1098 Lcy-Chr1:10018907 3.99E-52 dispersed
Lcy1g1098 Lcy-Chr1:10018907 Lcy7g1441 Lcy-Chr7:24257963 4.03E-71 dispersed
Lcy5g1820 Lcy-Chr5:40972995 Lcy1g1098 Lcy-Chr1:10018907 7.31E-41 dispersed
Lcy9g1757 Lcy-Chr9:42775728 Lcy1g1098 Lcy-Chr1:10018907 1.64E-43 dispersed
Lcy1g1098 Lcy-Chr1:10018907 Lcy3g1969 Lcy-Chr3:46840618 1.01E-77 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65657 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1098 K13415 - csv:101209118 2138.23