Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1098 | ATGATACCCTTTTGCCCATCTTCTTCAAAATCCTTTCTCAGGCTCTTTTTGTTCCTTTTCTCTCTCACTCTTCTCTCGCTCTCTGCTTTCTCTGTGACGCCTTCGCCTTCGCCTTCACACAGAGATACCCAGCAACTGATTTCCTTCAAATCTTCGCTTCCCAATCCGACCGTTCTTCAAAACTGGGTTTCCAATGGCGACGCGTGTTCGTTTCCCGGCATTATTTGCAAGGAAACCAGAGTTTCCGCAATAGACTTGAGCTTCTTGTCTCTGAGCTCTAATTTCAGCCATGTGTTCCCTTTGCTTGCGGGGCTCGACCATTTGGAATCGCTTTCTCTCAAATCTACTAACCTCACTGGCTCCATTTCTCTGCCCTCTGGATTCAAGTGTAGCTCTCTGCTTTCGTCTGTAGATCTGTCACTCAATGGCTTGTTTGGCTCGGTTTCTGATGTCTCTAACTTGGGGTTTTGCTCCAATGTCAAGTCGCTTAATCTGTCCTTTAACTCGTTTGATTTTCCCCCGAAAGACTCCGCCCCCGGATTGAAGCTCGATTTGCAGGTTCTCGATCTTTCTTCCAACCGGATTGTTGGGTCGAAGTTGGTTCCGTGGATTTTCTCTGCTGGGTGTGGTAATTTGCAGTACTTGGCATTGAAGGGCAATAAAATCAGCGGTGAGATTAATCTCTCCGCCTGTAATAAACTCGAGCATTTGGATATTTCCGGCAACAATTTCTCGGTGGGTATTCCGCCGTTGGGGGATTGCTCTGTTTTGGAGTATCTTGATATCTCCGGCAATAAGTTCACCGGCGACGTTGGACATGCTCTGTCGTCTTGTCTGCAACTCAGCTTCTTGAATCTCTCGAGCAACCAGTTTGGAGGTCCAATCCCTTCATTTGCATCGTCGAATTTGTGGTTTCTTTCGCTTGCTAACAACGATTTCCAAGGGGAGATTCCTGTAAGTATTGCAGATTCGTGTTCTAGTTTGGTAGAGCTCGATCTTTCTTCTAATAGTTTGATTGGGGCTGTGCCTGCTGCTTTGGGGTCTTGTTTTTCGTTGGAAACTTTGGACATTTCGAAAAATAACCTCTCTGGTGAGCTCCCCATTGCTGTTTTTGCTAAAATGAGTAGTCTCAAGAGACTCTCTGTCTCGGATAACAAGTTTTTTGGGGTTTTGTCGGATTCTCTGTCTCAACTCACCACTTTGAACTCTTTGGATCTGAGTTCTAATAACTTCTCTGGGTCGATTCCGGCCGGGCTCTGTAACGACCCTAATAACAGCTTGAAAGAATTGTTTCTTCAGAACAATTGGTTGACGGGTCGAATCCCTGCAACTATTAGTAACTGTTCTCAGCTGGTTTCTCTGGATTTGAGCTTCAACTTTCTGAGTGGGACGATCCCTTCCAGCTTGGGATCGCTTTCTAAGCTTAAGAACTTGATTATGTGGTTGAATCAGCTGGAGGGGGAGATTCCATCGGATTTTAAGAACTTTCAGGGGCTTGAGAATCTAATCCTGGATTTCAATGAGCTCACCGGGACGATTCCTTCTGGGTTAAGCAATTGCACCAACTTGAACTGGATTTCGTTGTCGAACAACCGGTTGAGCGGAGAGATTCCCACCTGGATTGGGCACCTACCCAACCTTGCCATCCTTAAACTCAGCAACAACTCGTTCTACGGTAGGATTCCTCCGGAGTTGGGCGATTGTCGGAGCTTGATCTGGCTTGACCTCAATACCAATAACTTGAATGGAACGATCCCTCCGGAGCTGTTTCGTCAATCGGGTAACATTGCTGTTAACTTTATCACCGGGAAGTCTTATGCTTACATTAAGAATGATGGTAGTAAGCAGTGCCATGGAGCTGGAAATTTGCTTGAGTTTGCTGGGATAAGACAGGAACAAGTGAACAGGATTTCAAGCAAGAGTCCCTGCAATTTCACCAGGGTTTATAAGGGAATGACTCAGCCGACGTTTAACCATAACGGTTCGATGATCTTTCTCGATCTTTCGCACAATATGTTGTCTGGTAGTATTCCCAAGGAGATTGGTTCTACAAACTATCTCTACATATTGGATTTGGGCCACAACAGGCTCTCCGGAGCCATTCCGCAGGAGCTCGGCGACTTGACGAAACTGAACATTCTTGATCTCTCAAGCAATGAGCTTGAAGGATCAATTCCATTGTCTTTGACTGGACTTTCCTCCCTCATGGAGATTGATCTATCAAACAATCATCTCAATGGTTCAATACCCGAATCAGCTCAGTTCGAAACGTTCCCGGCATCTGGTTTTGCAAATAATTCTGGCCTCTGTGGGTACCCTCTCCCTACATGTGGGGTTGATTCAGCAGCTAATGCAAATGCTCAGCATCAAAGATCTCATAGGAAACAGGCATCGCTTGCAGGGAGCGTCGCAATGGGGTTACTCTTCTCCCTCTTCTGTATATTCGGTCTGATTATAGTCGTTATTGAGATGAGGAAGAGAAGGAAAAAGAAGGATTCTACTCTTGATTCTTATGTCGACAGTCGTTCCCAATCTGGCACGACGACGGCCGTTAACTGGAAGCTAACCAGCACCCGTGAAGCATTGAGTATCAATCTTGCGACGTTCGAGAAGCCACTTCGGAAGTTGACATTTGCAGATCTTCTCGACGCGACGAATGGCTTCCACAATGATAGCCTGATTGGTAAAGGTGGTTTCGGCGACGTATACAAGGCTCAATTGAAGGATGGAAGCATTGTAGCTATCAAGAAGCTGATTCATGTCAGTGGACAGGGTGATAGGGAGTTCACTGCAGAAATGGAAACCATTGGCAAAATCAAACACCGAAACCTGGTACCTCTTCTGGGCTACTGCAAAGTCGGAGAAGAACGGCTTCTCGTGTACGAGTACATGAAATACGGAAGCTTGGAAGACGTTTTACACGACCAGAAGAAGGGCGGGATCAAACTGAATTGGGCTGCAAGAAGGAAGATTGCCATTGGAGCTGCAAGGGGACTGGCTTTCCTTCACCACAATTGCATCCCTCACATCATTCACAGGGACATGAAATCAAGCAATGTCTTATTGGATGAGAACTTGGAAGCTAGAGTCTCAGATTTTGGAATGGCAAGGCTGATGAGTGCCATGGACACCCATTTGAGTGTCAGCACATTAGCTGGAACACCCGGTTACGTCCCTCCCGAATATTACCAGAGCTTCCGATGTTCGACAAAAGGCGATGTTTACAGTTATGGTGTCGTCATGCTCGAGCTCCTAACAGGAAAGCGACCTACAGACTCTGCCGATTTTGGGGACAACAATCTTGTCGGATGGGTTAAACAACATGCCAAGTTGGACCTATCCGAAGTTTTCGACCCCGAGCTCATGAAGGAGGATCCAAGCCTCAAGATAGAGCTTTTAGAACACTTGAAGGTAGCTGTTGCTTGCTTAGATGATAGGTCATGGCGGCGTCCAACGATGATCCAAGTGATGACGATGTTCAAGGAAATCCAAGCAGGGTCAGGGATGGATTCGCAATCTACAATCGGAACCGACAATGGAGGATTCAGTGTCGACATGGTAGACATGAGCTTAAAGGAAGTACCAGAAGGCAAGTGA | 3597 | 46.4 | MIPFCPSSSKSFLRLFLFLFSLTLLSLSAFSVTPSPSPSHRDTQQLISFKSSLPNPTVLQNWVSNGDACSFPGIICKETRVSAIDLSFLSLSSNFSHVFPLLAGLDHLESLSLKSTNLTGSISLPSGFKCSSLLSSVDLSLNGLFGSVSDVSNLGFCSNVKSLNLSFNSFDFPPKDSAPGLKLDLQVLDLSSNRIVGSKLVPWIFSAGCGNLQYLALKGNKISGEINLSACNKLEHLDISGNNFSVGIPPLGDCSVLEYLDISGNKFTGDVGHALSSCLQLSFLNLSSNQFGGPIPSFASSNLWFLSLANNDFQGEIPVSIADSCSSLVELDLSSNSLIGAVPAALGSCFSLETLDISKNNLSGELPIAVFAKMSSLKRLSVSDNKFFGVLSDSLSQLTTLNSLDLSSNNFSGSIPAGLCNDPNNSLKELFLQNNWLTGRIPATISNCSQLVSLDLSFNFLSGTIPSSLGSLSKLKNLIMWLNQLEGEIPSDFKNFQGLENLILDFNELTGTIPSGLSNCTNLNWISLSNNRLSGEIPTWIGHLPNLAILKLSNNSFYGRIPPELGDCRSLIWLDLNTNNLNGTIPPELFRQSGNIAVNFITGKSYAYIKNDGSKQCHGAGNLLEFAGIRQEQVNRISSKSPCNFTRVYKGMTQPTFNHNGSMIFLDLSHNMLSGSIPKEIGSTNYLYILDLGHNRLSGAIPQELGDLTKLNILDLSSNELEGSIPLSLTGLSSLMEIDLSNNHLNGSIPESAQFETFPASGFANNSGLCGYPLPTCGVDSAANANAQHQRSHRKQASLAGSVAMGLLFSLFCIFGLIIVVIEMRKRRKKKDSTLDSYVDSRSQSGTTTAVNWKLTSTREALSINLATFEKPLRKLTFADLLDATNGFHNDSLIGKGGFGDVYKAQLKDGSIVAIKKLIHVSGQGDREFTAEMETIGKIKHRNLVPLLGYCKVGEERLLVYEYMKYGSLEDVLHDQKKGGIKLNWAARRKIAIGAARGLAFLHHNCIPHIIHRDMKSSNVLLDENLEARVSDFGMARLMSAMDTHLSVSTLAGTPGYVPPEYYQSFRCSTKGDVYSYGVVMLELLTGKRPTDSADFGDNNLVGWVKQHAKLDLSEVFDPELMKEDPSLKIELLEHLKVAVACLDDRSWRRPTMIQVMTMFKEIQAGSGMDSQSTIGTDNGGFSVDMVDMSLKEVPEGK | 1198 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10018907 | 10022503 | - | Maker00012942 | Lcy1g1098 | 623010 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1098 | 1198 | FunFam | Serine/threonine-protein kinase BRI1-like 1 | 601 | 658 | - | - | |
Lcy1g1098 | 1198 | Gene3D | Ribonuclease Inhibitor | 46 | 777 | IPR032675 | - | |
Lcy1g1098 | 1198 | SMART | serkin_6 | 888 | 1160 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1098 | 1198 | SUPERFAMILY | RNI-like | 68 | 376 | - | - | |
Lcy1g1098 | 1198 | Gene3D | - | 599 | 659 | - | - | |
Lcy1g1098 | 1198 | PANTHER | LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED | 301 | 1163 | IPR050647 | - | |
Lcy1g1098 | 1198 | Pfam | Brassinosteroid receptor island domain | 594 | 658 | IPR045381 | - | |
Lcy1g1098 | 1198 | SUPERFAMILY | Protein kinase-like (PK-like) | 874 | 1164 | IPR011009 | - | |
Lcy1g1098 | 1198 | Pfam | Leucine rich repeat | 687 | 745 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine rich repeat | 351 | 411 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine rich repeat | 498 | 556 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 424 | 604 | - | - | |
Lcy1g1098 | 1198 | Pfam | Protein kinase domain | 888 | 1157 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1098 | 1198 | ProSitePatterns | Protein kinases ATP-binding region signature. | 894 | 917 | IPR017441 | GO:0005524(InterPro) | |
Lcy1g1098 | 1198 | FunFam | serine/threonine-protein kinase BRI1-like 2 | 849 | 963 | - | - | |
Lcy1g1098 | 1198 | Gene3D | Transferase(Phosphotransferase) domain 1 | 964 | 1165 | - | - | |
Lcy1g1098 | 1198 | ProSiteProfiles | Protein kinase domain profile. | 888 | 1163 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1098 | 1198 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 1010 | 1022 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lcy1g1098 | 1198 | CDD | STKc_IRAK | 894 | 1163 | - | - | |
Lcy1g1098 | 1198 | FunFam | Brassinosteroid LRR receptor kinase | 964 | 1165 | - | - | |
Lcy1g1098 | 1198 | Gene3D | Phosphorylase Kinase; domain 1 | 848 | 963 | - | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 544 | 568 | IPR003591 | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 325 | 349 | IPR003591 | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 398 | 422 | IPR003591 | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 569 | 592 | IPR003591 | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 708 | 731 | IPR003591 | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 732 | 755 | IPR003591 | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 496 | 520 | IPR003591 | - | |
Lcy1g1098 | 1198 | SMART | LRR_typ_2 | 374 | 397 | IPR003591 | - | |
Lcy1g1098 | 1198 | FunFam | LRR receptor-like serine/threonine-protein kinase ERECTA | 655 | 777 | - | - | |
Lcy1g1098 | 1198 | SUPERFAMILY | RNI-like | 273 | 588 | - | - | |
Lcy1g1098 | 1198 | Pfam | Leucine rich repeat N-terminal domain | 41 | 76 | IPR013210 | - | |
Lcy1g1098 | 1198 | FunFam | LRR receptor-like serine/threonine-protein kinase GSO1 | 184 | 423 | - | - | |
Lcy1g1098 | 1198 | Pfam | Leucine Rich Repeat | 451 | 472 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine Rich Repeat | 426 | 448 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine Rich Repeat | 327 | 349 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine Rich Repeat | 281 | 298 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine Rich Repeat | 665 | 683 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine Rich Repeat | 233 | 250 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | Pfam | Leucine Rich Repeat | 257 | 278 | IPR001611 | GO:0005515(InterPro) | |
Lcy1g1098 | 1198 | PRINTS | Leucine-rich repeat signature | 708 | 721 | - | - | |
Lcy1g1098 | 1198 | PRINTS | Leucine-rich repeat signature | 352 | 365 | - | - | |
Lcy1g1098 | 1198 | SUPERFAMILY | L domain-like | 654 | 776 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy10g1582 | Lcy-Chr10:40180458 | Lcy1g1098 | Lcy-Chr1:10018907 | 5.04E-157 | dispersed | |
Lcy10g1970 | Lcy-Chr10:43780799 | Lcy1g1098 | Lcy-Chr1:10018907 | 6.52E-63 | dispersed | |
Lcy1g0648 | Lcy-Chr1:5554959 | Lcy1g1098 | Lcy-Chr1:10018907 | 3.99E-52 | dispersed | |
Lcy1g1098 | Lcy-Chr1:10018907 | Lcy7g1441 | Lcy-Chr7:24257963 | 4.03E-71 | dispersed | |
Lcy5g1820 | Lcy-Chr5:40972995 | Lcy1g1098 | Lcy-Chr1:10018907 | 7.31E-41 | dispersed | |
Lcy9g1757 | Lcy-Chr9:42775728 | Lcy1g1098 | Lcy-Chr1:10018907 | 1.64E-43 | dispersed | |
Lcy1g1098 | Lcy-Chr1:10018907 | Lcy3g1969 | Lcy-Chr3:46840618 | 1.01E-77 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65657 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1098 | K13415 | - | csv:101209118 | 2138.23 |