Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1116 ATGGACACAGCTGGTAGACTCATTGCTGGGTCTCACAATAGAAACGAGTTTGTTCTGATCAATGCAGATGAGACTGCTCGGATCAAGTCTGTGAAGGAATTGAGTGGGCAAACATGTCAGATTTGTGGAGATGAGGTAGAGTTAACTGTTGAAGGAGAGCTCTTTGTTGCCTGTAATGAATGTGCTTTCCCAGTTTGTAGACCTTGTTATGAGTATGAGAGAAGAGAGGGAAATCAAGCTTGCCCACAGTGTAAAACCAGATACAAGCGCATTAAAGGTAGTCCTAGGGTTGAAGGTGATGAGGATGAAGACGATATTGATGATTTGGATAATGAGTTTGACTATGGAAACATCGATGCTTTGGGCCCTTATGCTGCAGAGACATCGTTTACTTCACACCTTAACACTAGTTGTGGTTCCCACCCTAATGCATCTCATATCCCTGGACGGTCAGAGCATGAACCTTCTCCCCTTGGTTCCGAAATCCCTCTCCTGACATATGGCGAGGAGGATTATGAGATATCTTCTGATCAACACGCTCTTGTACCCCATTTTATGGGTCATGGAAACAGAGTCCACCCAATGCCTTACCCTGATCCATCAATACCTTCTCAACCTAGACCAATGGTTCCCCAAAAAGATATTGCGGTGTATGGTTATGGGAGTGTGGCGTGGAAGGACAGAATGGAGGATTGGAAGAAGAAGCAAAATGATAAACTTCAAGTGGTGAAGCACCAAGGGGTTGATGATGGTGGAAATGATATCGATGATCCTGATTTGCCCATGATGGATGAAGCTAGGCAACCACTATCAAGGAAGTTGCCCATCTCTTCAAGCAGGATTAATCCATACAGATTAATCATCTTGCTTCGTCTTGTTATTCTCGGCCTGTTTTTCCATTATAGAATTCTTCATCCGGTTAAAGATGCCTATGGCTTGTGGTTGACTTCAGTAATATGTGAAATATGGTTTGCTGTATCGTGGATTCTGGATCAGTTCCCAAAATGGTATCCAATCGAAAGGGAAACTTATCTTGATAGGCTGTCACTGAGGTATGAAAAAGAAGGGAAACCTTCTGAATTAGCAAGTGTGGACGTATTTGTCAGTACTGTTGATCCAATGAAAGAACCTCCACTGATCACTGCCAACACAGTACTTTCCATCCTTGCGGTCGACTATCCAGTCGATAAAGTTGCATGCTATGTCTCAGATGATGGTGCAGCCATGTTAACATTTGAAGCCCTCTCTGAGACATCTGAATTTGCAAGGAAATGGGTTCCTTTCTGTAAGAAATTCAATATCGAGCCTCGTGCCCCAGAGTTTTACTTCTCTCAGAAGATTGATTATTTGAAGAACAAGGTCCATCCAGCATTTGTCAGGGAAAGGCGGGCAATGAAGAGAGAATACGAAGAATTTAAGGTTAGGATAAATGCTTTGGTCTCAATGGCTCAAAAGGTTCCCGAGGATGGCTGGACAATGCAAGATGGTACTCCATGGCCTGGGAACAATGTTCGAGACCACCCTGGCATGATTCAGGTTTTCCTTGGCCAGAGTGGAGTTTGTGATGTTGAAGGAAATGAGCTACCACGTCTAGTTTATGTCTCTCGTGAAAAGCGGCCAGGGTTCGAACATCACAAGAAGGCTGGGGCCATGAATGCACTGGTTCGTGTCTCGGCAGTTCTGTCAAATGCTCCTTATCTTCTTAATGTTGACTGTGATCACTACATTAACAATAGCAAGGCACTTAGAGAAGCCATGTGTTTCATGATGGATCCTACGTCAGGGAAGAAAGTTTGTTATGTGCAGTTTCCTCAAAGATTTGATGGGATTGATCGACATGATCGATATTCAAACCGGAATGTTGTGTTCTTTGATATTAACATGAAAGGATTAGATGGTCTACAAGGCCCGATATATGTTGGTACGGGTTGTGTTTTCAGGAGGGTTGCCCTCTATGGATATGATGCTCCGGCCAAGAAGAAACCCCCAAGCAAAACATGCAACTGCTTGCCAAAATGGTGCTGTCTGTGTTGTGGGTCTAGAAAGAACAAGAAAGGAAAGGCCAAGAATGAGAAAAAGAAGAAGACAAAGCACAGAGAAGCATCAAAGCAGATCCATGCACTTGAGAATATCGAGGAGGGTATCGAAGAACTAAGCATAGAGAAAATGAATGTGTCTCAAATAAAGTTGGCAAAAAAATTCGGGCAATCTCCAGTGTTTGTTGCCTCGACCCTGTTGGAAAATGGAGGAGTTCCTCATGATGTGAGTGCTGCATCACTCCTAAGAGAAGCCATCCAAGTCATCAGTTGTGGTTATGAAGATAAAACAGAATGGGGGAAAGAGGTTGGGTGGATTTATGGTTCTGTGACTGAAGATATCTTGACTGGATTTAAAATGCACTGTCACGGTTGGCGGTCCGTATACTGTATCCCCAAGAGACCTGCGTTTAAAGGGTCAGCTCCAATCAATCTATCAGATCGTCTACACCAAGTTTTGCGGTGGGCTCTAGGATCTGTTGAGATATTCTTAAGCAGACACTGTCCTATCTGGTATGGCTATGGAGGCGGTTTGAAATGGTTGGAACGATTTTCGTACATAAACTCAGTGGTCTATCCGTGGACGTCAATTCCATTGCTTGTTTACTGTAGTCTTCCAGCTATCTGTCTGCTCACTGGAAAATTTATTGTTCCTGAGATTAGCAACTATGCTAGTCTTATTTTCATGGCACTCTTCATTTCAATTGCTGCGACCGGTATCCTTGAGATGCAGTGGGGTGGTGTCGGGATTGACGACTGGTGGAGAAACGAGCAGTTCTGGGTTATTGGAGGCGTTTCATCGCATCTTTTTGCTCTCTTCCAAGGTCTTCTCAAGGTTTTGGCTGGTGTCAGCACCAACTTCACAGTTACATCCAAAGCAGCTGATGATGGTGAATTTTCAGAGCTCTATGTCTTCAAGTGGACATCATTGTTAATACCTCCCACGACCTTGTTGATCATAAACATTGTCGGTGTGATCGTCGGGATCTCAGACGCCATCAATAATGGGTACGATTCCTGGGGTCCTCTTTTCGGAAGGCTATTTTTCGCTCTTTGGGTGATCATCCACCTCTACCCCTTCTTGAAGGGATTGTTAGGGAAACAAGACCGATTACCGACGATCATTGTTGTTTGGTCAATTCTTTTAGCCTCAATCTTAACATTACTTTGGGTAAGGATCAACCCATTTGTATCCAAAGATGGTCCTGTTTTAGAAGTTTGCGGATTGAATTGCGATTAG 3276 43.77 MDTAGRLIAGSHNRNEFVLINADETARIKSVKELSGQTCQICGDEVELTVEGELFVACNECAFPVCRPCYEYERREGNQACPQCKTRYKRIKGSPRVEGDEDEDDIDDLDNEFDYGNIDALGPYAAETSFTSHLNTSCGSHPNASHIPGRSEHEPSPLGSEIPLLTYGEEDYEISSDQHALVPHFMGHGNRVHPMPYPDPSIPSQPRPMVPQKDIAVYGYGSVAWKDRMEDWKKKQNDKLQVVKHQGVDDGGNDIDDPDLPMMDEARQPLSRKLPISSSRINPYRLIILLRLVILGLFFHYRILHPVKDAYGLWLTSVICEIWFAVSWILDQFPKWYPIERETYLDRLSLRYEKEGKPSELASVDVFVSTVDPMKEPPLITANTVLSILAVDYPVDKVACYVSDDGAAMLTFEALSETSEFARKWVPFCKKFNIEPRAPEFYFSQKIDYLKNKVHPAFVRERRAMKREYEEFKVRINALVSMAQKVPEDGWTMQDGTPWPGNNVRDHPGMIQVFLGQSGVCDVEGNELPRLVYVSREKRPGFEHHKKAGAMNALVRVSAVLSNAPYLLNVDCDHYINNSKALREAMCFMMDPTSGKKVCYVQFPQRFDGIDRHDRYSNRNVVFFDINMKGLDGLQGPIYVGTGCVFRRVALYGYDAPAKKKPPSKTCNCLPKWCCLCCGSRKNKKGKAKNEKKKKTKHREASKQIHALENIEEGIEELSIEKMNVSQIKLAKKFGQSPVFVASTLLENGGVPHDVSAASLLREAIQVISCGYEDKTEWGKEVGWIYGSVTEDILTGFKMHCHGWRSVYCIPKRPAFKGSAPINLSDRLHQVLRWALGSVEIFLSRHCPIWYGYGGGLKWLERFSYINSVVYPWTSIPLLVYCSLPAICLLTGKFIVPEISNYASLIFMALFISIAATGILEMQWGGVGIDDWWRNEQFWVIGGVSSHLFALFQGLLKVLAGVSTNFTVTSKAADDGEFSELYVFKWTSLLIPPTTLLIINIVGVIVGISDAINNGYDSWGPLFGRLFFALWVIIHLYPFLKGLLGKQDRLPTIIVVWSILLASILTLLWVRINPFVSKDGPVLEVCGLNCD 1091
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10222821 10230252 - Maker00013156 Lcy1g1116 623028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1116 1091 CDD mRING-HC-C4C4_CesA 37 87 - -
Lcy1g1116 1091 Pfam Cellulose synthase 364 1079 IPR005150 GO:0016020(InterPro)|GO:0016760(InterPro)|GO:0030244(InterPro)
Lcy1g1116 1091 Pfam Zinc-binding RING-finger 29 105 IPR027934 -
Lcy1g1116 1091 SUPERFAMILY Nucleotide-diphospho-sugar transferases 377 909 IPR029044 -
Lcy1g1116 1091 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 520 656 IPR029044 -
Lcy1g1116 1091 MobiDBLite consensus disorder prediction 682 701 - -
Lcy1g1116 1091 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 112 IPR013083 -
Lcy1g1116 1091 FunFam Cellulose synthase 21 112 - -
Lcy1g1116 1091 PANTHER X-BOX TRANSCRIPTION FACTOR-RELATED 274 1060 - GO:0005802(PANTHER)|GO:0005886(PANTHER)|GO:0009833(PANTHER)|GO:0016759(PANTHER)|GO:0030244(PANTHER)
Lcy1g1116 1091 FunFam Cellulose synthase 481 655 - -
Lcy1g1116 1091 SUPERFAMILY RING/U-box 25 111 - -
Lcy1g1116 1091 ProSiteProfiles Zinc finger RING-type profile. 39 85 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1116 Lcy-Chr1:10222821 Lcy2g0192 Lcy-Chr2:1503640 0 dispersed
Lcy1g1116 Lcy-Chr1:10222821 Lcy9g0447 Lcy-Chr9:12581069 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1116 K10999 - csv:101211094 2103.18