Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1128 | ATGGGGTTGGGAAAGGCTGTCAGCCAGTTTTTGAAAAAGATGGCAGACGCCGAGGATATTCAGCCACTTGTTTGCGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCATCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCCATGTACGTTGCCATCCAGGCCGTTCTGTCTCTCTATGCTAGTGGACGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCGCTCCCTCATGCAATTCTCCGTTTGGACCTTGCTGGTCGTGACCTCACTGATGCTCTAATGAAGATCCTCACTGAAAGAGGTTACATGTTCACCACTACTGCAGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCTTCTATTGAGAAGAACTATGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATTGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAAATCACAGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTTGTTGCGCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCTATCCTTGCATCTCTAAGCACCTTCCAGCAGACTGACACATGGGTTTTATGTTGTATTCACAGATGTGGATCTCAAAGGGTGAATATGACGAATCGGGCCCATCGATTGTCCACAGGAAGTGCTTCTGAGGTGGTGAATTTCTTTGATGATGATGAT | 1233 | 47.2 | MGLGKAVSQFLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQTDTWVLCCIHRCGSQRVNMTNRAHRLSTGSASEVVNFFDDDD | 411 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10429941 | 10432684 | - | Maker00013300 | Lcy1g1128 | 623040 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1128 | 411 | Gene3D | Actin; Chain A, domain 4 | 195 | 286 | - | - | |
Lcy1g1128 | 411 | ProSitePatterns | Actins signature 1. | 68 | 78 | IPR004001 | - | |
Lcy1g1128 | 411 | Gene3D | - | 153 | 353 | - | - | |
Lcy1g1128 | 411 | FunFam | Actin, alpha skeletal muscle | 16 | 191 | - | - | |
Lcy1g1128 | 411 | PRINTS | Actin signature | 130 | 143 | IPR004000 | - | |
Lcy1g1128 | 411 | PRINTS | Actin signature | 41 | 50 | IPR004000 | - | |
Lcy1g1128 | 411 | PRINTS | Actin signature | 76 | 98 | IPR004000 | - | |
Lcy1g1128 | 411 | PRINTS | Actin signature | 155 | 174 | IPR004000 | - | |
Lcy1g1128 | 411 | PRINTS | Actin signature | 251 | 267 | IPR004000 | - | |
Lcy1g1128 | 411 | PRINTS | Actin signature | 64 | 75 | IPR004000 | - | |
Lcy1g1128 | 411 | SMART | actin_3 | 20 | 382 | IPR004000 | - | |
Lcy1g1128 | 411 | FunFam | Actin, muscle | 195 | 286 | - | - | |
Lcy1g1128 | 411 | Pfam | Actin | 18 | 370 | IPR004000 | - | |
Lcy1g1128 | 411 | FunFam | Major actin | 274 | 353 | - | - | |
Lcy1g1128 | 411 | SUPERFAMILY | Actin-like ATPase domain | 162 | 369 | IPR043129 | - | |
Lcy1g1128 | 411 | SUPERFAMILY | Actin-like ATPase domain | 19 | 168 | IPR043129 | - | |
Lcy1g1128 | 411 | PANTHER | ACTIN | 21 | 369 | IPR004000 | - | |
Lcy1g1128 | 411 | Gene3D | - | 23 | 370 | - | - | |
Lcy1g1128 | 411 | ProSitePatterns | Actins and actin-related proteins signature. | 119 | 131 | IPR020902 | - | |
Lcy1g1128 | 411 | CDD | NBD_sugar-kinase_HSP70_actin | 23 | 196 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1128 | Lcy-Chr1:10429941 | Lcy1g1441 | Lcy-Chr1:13981352 | 1.09E-257 | dispersed | |
Lcy1g1128 | Lcy-Chr1:10429941 | Lcy8g0203 | Lcy-Chr8:5066839 | 1.06E-267 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1128 | K10355 | - | csv:101220617 | 711.835 |