Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1128 ATGGGGTTGGGAAAGGCTGTCAGCCAGTTTTTGAAAAAGATGGCAGACGCCGAGGATATTCAGCCACTTGTTTGCGACAATGGAACTGGAATGGTGAAGGCTGGTTTTGCTGGTGATGATGCTCCCAGGGCAGTTTTCCCCAGTATTGTTGGTCGTCCCCGACATACCGGTGTCATGGTTGGGATGGGCCAAAAAGATGCCTATGTTGGGGATGAAGCTCAGTCTAAAAGAGGTATCCTTACCTTGAAATATCCCATTGAACATGGTATAGTCAGTAACTGGGATGACATGGAAAAGATTTGGCATCACACTTTCTACAATGAGCTTCGTGTTGCTCCCGAAGAGCATCCTGTGCTTCTGACTGAGGCTCCACTCAACCCAAAGGCTAACAGAGAAAAGATGACTCAAATCATGTTTGAGACATTCAATGTGCCTGCCATGTACGTTGCCATCCAGGCCGTTCTGTCTCTCTATGCTAGTGGACGTACAACTGGTATCGTGCTGGATTCTGGTGATGGTGTGAGTCACACTGTTCCCATCTATGAGGGTTATGCGCTCCCTCATGCAATTCTCCGTTTGGACCTTGCTGGTCGTGACCTCACTGATGCTCTAATGAAGATCCTCACTGAAAGAGGTTACATGTTCACCACTACTGCAGAACGGGAAATTGTCCGTGACATGAAGGAGAAGCTGGCATATGTTGCTCTTGACTACGAACAAGAACTCGAGACTGCAAAGAGCAGTTCTTCTATTGAGAAGAACTATGAACTTCCTGATGGACAAGTCATCACCATTGGAGCTGAGAGATTCCGTTGCCCAGAAGTTCTATTCCAGCCATCTCTCATTGGTATGGAAGCTGCAGGAATCCACGAAACTACCTACAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACCTTTACGGAAACATCGTCCTCAGTGGTGGTTCAACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAAATCACAGCCCTCGCTCCCAGCAGCATGAAGATCAAGGTTGTTGCGCCACCAGAAAGGAAATACAGTGTCTGGATTGGAGGATCTATCCTTGCATCTCTAAGCACCTTCCAGCAGACTGACACATGGGTTTTATGTTGTATTCACAGATGTGGATCTCAAAGGGTGAATATGACGAATCGGGCCCATCGATTGTCCACAGGAAGTGCTTCTGAGGTGGTGAATTTCTTTGATGATGATGAT 1233 47.2 MGLGKAVSQFLKKMADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYMFTTTAEREIVRDMKEKLAYVALDYEQELETAKSSSSIEKNYELPDGQVITIGAERFRCPEVLFQPSLIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQTDTWVLCCIHRCGSQRVNMTNRAHRLSTGSASEVVNFFDDDD 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10429941 10432684 - Maker00013300 Lcy1g1128 623040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1128 411 Gene3D Actin; Chain A, domain 4 195 286 - -
Lcy1g1128 411 ProSitePatterns Actins signature 1. 68 78 IPR004001 -
Lcy1g1128 411 Gene3D - 153 353 - -
Lcy1g1128 411 FunFam Actin, alpha skeletal muscle 16 191 - -
Lcy1g1128 411 PRINTS Actin signature 130 143 IPR004000 -
Lcy1g1128 411 PRINTS Actin signature 41 50 IPR004000 -
Lcy1g1128 411 PRINTS Actin signature 76 98 IPR004000 -
Lcy1g1128 411 PRINTS Actin signature 155 174 IPR004000 -
Lcy1g1128 411 PRINTS Actin signature 251 267 IPR004000 -
Lcy1g1128 411 PRINTS Actin signature 64 75 IPR004000 -
Lcy1g1128 411 SMART actin_3 20 382 IPR004000 -
Lcy1g1128 411 FunFam Actin, muscle 195 286 - -
Lcy1g1128 411 Pfam Actin 18 370 IPR004000 -
Lcy1g1128 411 FunFam Major actin 274 353 - -
Lcy1g1128 411 SUPERFAMILY Actin-like ATPase domain 162 369 IPR043129 -
Lcy1g1128 411 SUPERFAMILY Actin-like ATPase domain 19 168 IPR043129 -
Lcy1g1128 411 PANTHER ACTIN 21 369 IPR004000 -
Lcy1g1128 411 Gene3D - 23 370 - -
Lcy1g1128 411 ProSitePatterns Actins and actin-related proteins signature. 119 131 IPR020902 -
Lcy1g1128 411 CDD NBD_sugar-kinase_HSP70_actin 23 196 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1128 Lcy-Chr1:10429941 Lcy1g1441 Lcy-Chr1:13981352 1.09E-257 dispersed
Lcy1g1128 Lcy-Chr1:10429941 Lcy8g0203 Lcy-Chr8:5066839 1.06E-267 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1128 K10355 - csv:101220617 711.835