Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1135 ATGGAGGAAAAGTGGTTGATTTTGAAATGGCTTTGGCTTCCTCTTCTGCTTTTCCTCCTCCTTCTCCCAGCTGCTTCCGCTGAAGAAATTTTGTCATTCTCCTCTAGCAGCATCTTCAATAACCGCAAAATCTCCCCATCCCGAAGTGCTTCTTCTGAAGAAGCCACTTATGCCGTCATTTTCGACGCCGGTAGCTCCGGCAGCCGCGTTCATGTGTTCCATTTCAACTCCGATTTGGAGCTGCTTTACATTGGTGCAGACATTGAAGTCTCTCAAAAGATTAAAGGAGGGCTGAGTGACTACCCCGACGACCCACAGAAGGCGGCGGATTCTCTGGTTTCTCTCCTCGATTTAGCGGAAAAGAAAGTGCCCTCCGAGTTTCATTCCACCACACCCATTCGTCTCGGGGCAACTGCAGGGTTGAGACTGTTGGATGCAGATAAAGCTAAGAGAATTCTGCAAGCGGTTAGAAAACTTTTTAAAATGAAAAGCACATTCAACTACCGAGCTGATGGAGTTACTATTCTTACTGGTAATCAAGAGGGTTCCTACATGTGGGCAACAATAAACTATTTGTTGGGGAATTTGGGGAAGAAATATTCAAAGACAGTTGGAGCAGTGGACCTTGGTGGTGCCTCTATTCAAATGGCTTATGCTCTCTCTGAAGAAGCTGCAGCAAAGGCTCCTCATTCTCCACAAAATGAGGATGGATATATTCAACAATTTTATTTCAAGGGAACCAAATATTTTCTCTATGTTCACAGTTATTTGCATTATGGTGCAAAAGCAGCCAGAGCTGAGATTTTGAAAGTAACCAAAAATTCATCCAACCCATGCATCTTAGCTGGTTATCAAGGTATATACAAATACCATGGAAAAGAATACAAAGCGTCAGCATCTCCATTAGGGCCAAGCTTGAGAGGGTGTGAGAGAGTGATTATGAAGGCTATGAAAGTGAACAAACCCTGTAATTACAGCGGTTGCAGTTTCAACGGAATTTGGAACGGCGGCGGCGGCGGCGAAGGCTTCTATAATCTCTATTTTGCTTCCAACTTCTACGGCGTTCCGGCAAAGACTGGTATCATTGACTCCAACAAAAAGGTGGGCAAGGCACGAGCATCTGATTTTATGAAAGTGGCAGAGCGGGCTTGCTTAACCAAATATGAAGATGCAAAAGCAACCTTCCCCAATTATTCTAAGAAATACGTGCAATACGTGTGCTTGGATATTCTCTACCAGTATTCCCTCATTGTTCATGGCTTTGGTACTCGGAGGTCGACGGTGGCATCTGGTAGTCAGAGGTTGACTGTAGCAGCTGGTCGACAGAGGTCGGTGGCGTCTAAGGTCGACGATAGTGGTCAGTCGGCGGAGGCTGGTCAACAGGGGTCGACGGCGCCCAGTAGTCGGAGGTTAACGATGGTGGTTGGTCGATGGCGACAGCTGGTCGACAGAGATCGGTGGCGGTCAGTCGGCGAAGGTCGATCAGCGGAGATCAGCGATGATCAATACTCAGAGGTCGACGGTAGTGGCTGGTCGGCGATGCCCGGTAGTCTGAGGTTAACGGTAGCGGTCAGTCGGCGGAGGCTGGTCAACAGGGGTCGACGGCGCCCAGTAGTCGGAGGTCGACGATTGTGGTTGGTAGATGGGGCCAGGTCAGCATTGGCCGGTAGTCGGAGGTCGACGACGGCGGTCGGTCGGTGGTGGTTGGTTGACGATAGTCAGAGGTTGGCAACGCCCGGTAGGCAGAGGTCGACGGTGGCGGTCGTTTGGTGGAGGTCGGCGGTTGCCGGTAGTGGCTGGTCGGCAGCACCTGGTAGTCTGAGATCGACGGTAGCGTTGGAGTTCGACGGTAGCGGTCGGTCGGCAGAGGCTGGTCAGCGGAGGTCGGCAGAGGCCGGTTATCGTAGGTCGATGGTGGCTGTCGGTTGGCGATGGTCAGCGTTGGCCGATAGTCTGAGGTCGACCACGGTGGCCGATCGGTGGAGGTTGGCGGCAACCGGAAGTCGGAGGTCGACGGTGGCGGTTGATCGGCGGAGGTCGGCGACGGCGGCCAATCGGTGGAGGTCGGTGGCATGCGGTAGTCGGAGGTAG 2091 51.94 MEEKWLILKWLWLPLLLFLLLLPAASAEEILSFSSSSIFNNRKISPSRSASSEEATYAVIFDAGSSGSRVHVFHFNSDLELLYIGADIEVSQKIKGGLSDYPDDPQKAADSLVSLLDLAEKKVPSEFHSTTPIRLGATAGLRLLDADKAKRILQAVRKLFKMKSTFNYRADGVTILTGNQEGSYMWATINYLLGNLGKKYSKTVGAVDLGGASIQMAYALSEEAAAKAPHSPQNEDGYIQQFYFKGTKYFLYVHSYLHYGAKAARAEILKVTKNSSNPCILAGYQGIYKYHGKEYKASASPLGPSLRGCERVIMKAMKVNKPCNYSGCSFNGIWNGGGGGEGFYNLYFASNFYGVPAKTGIIDSNKKVGKARASDFMKVAERACLTKYEDAKATFPNYSKKYVQYVCLDILYQYSLIVHGFGTRRSTVASGSQRLTVAAGRQRSVASKVDDSGQSAEAGQQGSTAPSSRRLTMVVGRWRQLVDRDRWRSVGEGRSAEISDDQYSEVDGSGWSAMPGSLRLTVAVSRRRLVNRGRRRPVVGGRRLWLVDGARSALAGSRRSTTAVGRWWLVDDSQRLATPGRQRSTVAVVWWRSAVAGSGWSAAPGSLRSTVALEFDGSGRSAEAGQRRSAEAGYRRSMVAVGWRWSALADSLRSTTVADRWRLAATGSRRSTVAVDRRRSATAANRWRSVACGSRR 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10560182 10570190 - Maker00012998 Lcy1g1135 623047
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1135 696 Gene3D Exopolyphosphatase. Domain 2 177 426 - -
Lcy1g1135 696 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 176 191 IPR000407 GO:0016787(InterPro)
Lcy1g1135 696 CDD NBD_sugar-kinase_HSP70_actin 59 218 - -
Lcy1g1135 696 MobiDBLite consensus disorder prediction 442 469 - -
Lcy1g1135 696 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 7 430 IPR000407 GO:0016787(InterPro)
Lcy1g1135 696 Gene3D - 57 176 - -
Lcy1g1135 696 MobiDBLite consensus disorder prediction 447 469 - -
Lcy1g1135 696 Pfam GDA1/CD39 (nucleoside phosphatase) family 50 426 IPR000407 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1135 Lcy-Chr1:10560182 Lcy1g1663 Lcy-Chr1:17171582 2.40E-138 dispersed
Lcy1g1135 Lcy-Chr1:10560182 Lcy1g1136 Lcy-Chr1:10577247 2.87E-242 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1135 K14641 - cit:102627845 414.075