Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1136 ATGGAGGAAAAGTGGTTGATTTTGAAATGGCTTTGGGTTCCTCTTCTGCTTTTCCTCCTCCTCCTTCCAGCTGCTTCCGCTGAAGAAATTTTGTCATTCTCCTCTAACAGCTTCTTCAATAACCGCAAAATCTCCCCATCCCGAAGTGCTTCTTCTGAAGAAGCCACTTATGCCGTCATTTTCGACGCCGGTAGCTCCGGCAGCCGCGTTCATGTGTTCCATTTCAACTCCGATCTGGAGCTCCTTTACATTGGTGCAAACATCGATGTCACTAAAAAGGTTAAACCAGGGCTGAGTTCGTACTCCGACGACCCACAGAAGGGGGCGGATTCTCTGCTTCCTCTCCTAAATTTAGCTGAAACATCTGTGCCCTCAGAGTTTCAACCCTCCACACCCATTGTTCTCGGGGCAACTGCAGGGTTGAGACTGTTGGATGCAGATAAAGCTGAGAAAATTCTAGAAGCGGTTAGGGAACTTTTTAAGACGAAAAGCACATTCAAGTACCGAGCTGATGAGGTTACTATTATTAGTGGTAATCAGGAGGGCTCCTACATGTGGGCAACAATAAACTATTTGTTGAAGAATTTGGGGGAGCAATACTCAAAGACAGTGGGAGTGGTGGATCTTGGTGGTGCCTCTGTTCAAATGGCTTATGCTATCTCTGAAGATGCTGCTGCAAATGCTCCTAATTCTCCACAAAATGAGGATGGATATATTCAACAATTTTATTTCAAGGGAACCAAATATTCTCTCTATGTTCACAGTTATTTGCCTTATGGTGCACTAGCAGTCAGAGCTGAGATTTTGCAAGTAACCAAAAATTCATCCAACCCATGCATCTTAGCTGGTTTTCAAGGTACATACAAGTACAATGGAAAAGAATACAAAGCGTCAGCTTCTCCATTTGGGGCAAACTTGAAAGGGTGTGTGAGAGTGATTAAGGAGGCTATGAAAGTGAACAAACCCTGTAATTACAGCGGTTGCAGTTTCAACGGAATTTGGAACGGCGGCGGCGGCCAAGGCTTCGACAATCTCTACTTTGCTTCCTCCTTCTACGAAACTTCAGCCAAGACCGGTATCATCGACTCGAACAAAATGGTGGATAAGGCACGAGCAGCTGATTTCTTGAGAGTGGCAAAGCGGGCTTGCTCAACCAAATATGAGGATGCAAAAGCAGCGTTCCCCGATTATTGGGAGGAAAGCTTGCCATACGTGTGCATGGATATTCTCTACGAGTATTCTCTCATTGTTTATGGCTTTGGTATTAGCCCCTATAAGAAGATATCATTGGTGAGTCAATTGGAGTATCATGGTTCTTCTGTTGATGTTGCATGGCCCTTGGGCAATGCCCTAGCTGCTGTCTCAAAACATGATGAAGCCCTATTCCTCACTACCTAA 1398 44.99 MEEKWLILKWLWVPLLLFLLLLPAASAEEILSFSSNSFFNNRKISPSRSASSEEATYAVIFDAGSSGSRVHVFHFNSDLELLYIGANIDVTKKVKPGLSSYSDDPQKGADSLLPLLNLAETSVPSEFQPSTPIVLGATAGLRLLDADKAEKILEAVRELFKTKSTFKYRADEVTIISGNQEGSYMWATINYLLKNLGEQYSKTVGVVDLGGASVQMAYAISEDAAANAPNSPQNEDGYIQQFYFKGTKYSLYVHSYLPYGALAVRAEILQVTKNSSNPCILAGFQGTYKYNGKEYKASASPFGANLKGCVRVIKEAMKVNKPCNYSGCSFNGIWNGGGGQGFDNLYFASSFYETSAKTGIIDSNKMVDKARAADFLRVAKRACSTKYEDAKAAFPDYWEESLPYVCMDILYEYSLIVYGFGISPYKKISLVSQLEYHGSSVDVAWPLGNALAAVSKHDEALFLTT 465
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 10577247 10585786 - Maker00013411 Lcy1g1136 623048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1136 465 ProSitePatterns GDA1/CD39 family of nucleoside phosphatases signature. 176 191 IPR000407 GO:0016787(InterPro)
Lcy1g1136 465 Gene3D Exopolyphosphatase. Domain 2 177 437 - -
Lcy1g1136 465 Pfam GDA1/CD39 (nucleoside phosphatase) family 50 456 IPR000407 GO:0016787(InterPro)
Lcy1g1136 465 Gene3D - 57 451 - -
Lcy1g1136 465 CDD NBD_sugar-kinase_HSP70_actin 59 218 - -
Lcy1g1136 465 FunFam Apyrase 1 177 435 - -
Lcy1g1136 465 PANTHER ADENOSINE/GUANOSINE DIPHOSPHATASE 7 455 IPR000407 GO:0016787(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1136 Lcy-Chr1:10577247 Lcy1g1663 Lcy-Chr1:17171582 7.95E-151 dispersed
Lcy1g1135 Lcy-Chr1:10560182 Lcy1g1136 Lcy-Chr1:10577247 2.87E-242 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1136 K14641 - cit:102627845 472.626