Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1143 | ATGGAGCCCCATCACCTCCCAAACTCCTCTTCTCATCTCCAACACTCCGCCATGGACGATCACGATATCCTTCATCATCATCACCACGTCCACGAGCTCGATTCCATTTGGTCGTCGGTGTTGCCTTTTCAACCCTCCGATCCTCATCAAGAGTTTCCCACCTCCTCCACCCACTTGCTGATCAGCTACGGTACTCCGAGTTCTGGGGCAGGTGATGATCAAGAGGAGCCGGAAGAAGAGCTAGGTGCCATGAAGGAGATGATGTACAAGATCGCTGCGATGCAGCCAGTGGACATCGACCCTTCAACCATCCGAAAGCCCAAGCGACGGAATGTTCGAATTAGCGACGACCCGCAAAGCATCGCCGCCCGTCTCCGACGAGAGAGGATCAGCGAGAAGATCAGAATTCTTCAGAGGCTTGTGCCCGGAGGAACAAAGATGGACACAGCTTCAATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCCGGTTGCTGCAGTCGAGTCAGCCGGCGCAACAGCCGAGCACTGGCGGTGGCGCCGCCGCTGGAGGGTGGCCATTTACATTCCACAAGGCTAATGGTTCAACCTCCTCGTCCACTTCCATGGAGACCACTCCCGCCATTACACCATCAGGATGGTGA | 657 | 54.79 | MEPHHLPNSSSHLQHSAMDDHDILHHHHHVHELDSIWSSVLPFQPSDPHQEFPTSSTHLLISYGTPSSGAGDDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPAQQPSTGGGAAAGGWPFTFHKANGSTSSSTSMETTPAITPSGW | 218 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10686800 | 10687557 | + | Maker00012117 | Lcy1g1143 | 623055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1143 | 218 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 114 | 163 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g1143 | 218 | MobiDBLite | consensus disorder prediction | 59 | 80 | - | - | |
Lcy1g1143 | 218 | MobiDBLite | consensus disorder prediction | 195 | 218 | - | - | |
Lcy1g1143 | 218 | MobiDBLite | consensus disorder prediction | 173 | 218 | - | - | |
Lcy1g1143 | 218 | CDD | bHLH_AtIND_like | 115 | 172 | - | - | |
Lcy1g1143 | 218 | Pfam | Helix-loop-helix DNA-binding domain | 123 | 164 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g1143 | 218 | SMART | finulus | 120 | 169 | IPR011598 | GO:0046983(InterPro) | |
Lcy1g1143 | 218 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 119 | 173 | IPR036638 | GO:0046983(InterPro) | |
Lcy1g1143 | 218 | Gene3D | - | 117 | 181 | IPR036638 | GO:0046983(InterPro) | |
Lcy1g1143 | 218 | FunFam | BHLH transcription factor | 117 | 181 | - | - | |
Lcy1g1143 | 218 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 7 | 198 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy12g0724 | Lcy-Chr12:9199969 | Lcy1g1143 | Lcy-Chr1:10686800 | 4.77E-29 | dispersed | |
Lcy1g1143 | Lcy-Chr1:10686800 | Lcy3g2191 | Lcy-Chr3:48815160 | 6.09E-37 | dispersed | |
Lcy1g1143 | Lcy-Chr1:10686800 | Lcy8g0681 | Lcy-Chr8:24954688 | 3.84E-41 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
19593 | None | None | None | None | Lcy | TF |
Pathway information
