Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1143 ATGGAGCCCCATCACCTCCCAAACTCCTCTTCTCATCTCCAACACTCCGCCATGGACGATCACGATATCCTTCATCATCATCACCACGTCCACGAGCTCGATTCCATTTGGTCGTCGGTGTTGCCTTTTCAACCCTCCGATCCTCATCAAGAGTTTCCCACCTCCTCCACCCACTTGCTGATCAGCTACGGTACTCCGAGTTCTGGGGCAGGTGATGATCAAGAGGAGCCGGAAGAAGAGCTAGGTGCCATGAAGGAGATGATGTACAAGATCGCTGCGATGCAGCCAGTGGACATCGACCCTTCAACCATCCGAAAGCCCAAGCGACGGAATGTTCGAATTAGCGACGACCCGCAAAGCATCGCCGCCCGTCTCCGACGAGAGAGGATCAGCGAGAAGATCAGAATTCTTCAGAGGCTTGTGCCCGGAGGAACAAAGATGGACACAGCTTCAATGCTAGATGAAGCCATTCGCTATGTCAAGTTCTTGAAGCGACAAATCCGGTTGCTGCAGTCGAGTCAGCCGGCGCAACAGCCGAGCACTGGCGGTGGCGCCGCCGCTGGAGGGTGGCCATTTACATTCCACAAGGCTAATGGTTCAACCTCCTCGTCCACTTCCATGGAGACCACTCCCGCCATTACACCATCAGGATGGTGA 657 54.79 MEPHHLPNSSSHLQHSAMDDHDILHHHHHVHELDSIWSSVLPFQPSDPHQEFPTSSTHLLISYGTPSSGAGDDQEEPEEELGAMKEMMYKIAAMQPVDIDPSTIRKPKRRNVRISDDPQSIAARLRRERISEKIRILQRLVPGGTKMDTASMLDEAIRYVKFLKRQIRLLQSSQPAQQPSTGGGAAAGGWPFTFHKANGSTSSSTSMETTPAITPSGW 218
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 10686800 10687557 + Maker00012117 Lcy1g1143 623055
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1143 218 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 114 163 IPR011598 GO:0046983(InterPro)
Lcy1g1143 218 MobiDBLite consensus disorder prediction 59 80 - -
Lcy1g1143 218 MobiDBLite consensus disorder prediction 195 218 - -
Lcy1g1143 218 MobiDBLite consensus disorder prediction 173 218 - -
Lcy1g1143 218 CDD bHLH_AtIND_like 115 172 - -
Lcy1g1143 218 Pfam Helix-loop-helix DNA-binding domain 123 164 IPR011598 GO:0046983(InterPro)
Lcy1g1143 218 SMART finulus 120 169 IPR011598 GO:0046983(InterPro)
Lcy1g1143 218 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 173 IPR036638 GO:0046983(InterPro)
Lcy1g1143 218 Gene3D - 117 181 IPR036638 GO:0046983(InterPro)
Lcy1g1143 218 FunFam BHLH transcription factor 117 181 - -
Lcy1g1143 218 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 7 198 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0724 Lcy-Chr12:9199969 Lcy1g1143 Lcy-Chr1:10686800 4.77E-29 dispersed
Lcy1g1143 Lcy-Chr1:10686800 Lcy3g2191 Lcy-Chr3:48815160 6.09E-37 dispersed
Lcy1g1143 Lcy-Chr1:10686800 Lcy8g0681 Lcy-Chr8:24954688 3.84E-41 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19593 None None None None Lcy TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1143 - - - 0.0