Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1154 ATGCCTGCTTGGTGGGTAAGAAAATTCAGTAAAAACAAGGAGCATCACAATCACCCCACTACCTTTCTCAGCTCCTCCAAGTCTTCTTCCCCCAAAAGTGAGCCTAAGAAGCCCACCGATAAGCCCAGGAGCTTCGATGAGGTCTCTGCTGTGATTTTCTCTCGCAGTTCCCCGAGGTCCAGCAGGGATCTCGGCTCTTCTGGGGGTGCTGATCGTGGCGGCTCTTCTGGGTTTTCTGGTTTTGACTCCGATAGTGGGGATAAGAGTCATCCTCTTCCTCGTCCTAATACTTCCGCCCTTGGGATTGATCAAGGAGTCGGGATTGGATCTGGGTCGGCTTCGGTTTCCAGTGTTAGCTCTTGTGGCTCTTCGGATGATCATCCATCTTCTCACGAACAGCTTCAATTTGGAGGTTACAGGTGGGTTTCTTATTTGGAAGTCCATATGTTTGAAATTTTATTCAGAGGATATGCCGATACCAGAATAGAGACCAGGCCAAGAAGTCCAGGTCCAGGATCAAGAGGACCCACCAGTCCTACATCGCCTCTCAACCCACGGTTCTGTGGCATGAGTCTAGAGTCTCCTACAGGCAAGCTAGATGATGGTAAGGGTCGATGTCATAAGCTGCCGCTTCCTCCTCCTCCAAGTTCTCCCACCAGCCCTTCTTCCTTGACCACGCAATCTAAGTGGAAGAAAGGAAAACTTCTAGGAAGAGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATTAGTGATGACTCGACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATAACTGTGCTCAGTCAGTTGTCGCATCCAAACATCGTCCGGTACTATGGTAGTGAAATGGGTGAAGAATCGCTCTCGGTGTACTTAGAATACGTCTCCGGTGGTTCAATTCACAAGTTGCTTCAGGAATATGGCGCCTTCAAGGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCTGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATCAAAGGGGCAAACATCTTAGTGGATCCAAATGGCGAGGTCAAGTTGGTTGACTTTGGCATGGCAAAACATTTTCTTGTTGTGGAATCTCAGGTTGTGATGAATACAAATGGCTACAGTATTGCTGTAGATATTTGGAGTTTAGGGTGTACGGTTCTGGAAATGGCAACATCTAAACCGCCTTGGAACAAATACGAAGGGGTGGCTGCCATTTTCAAAATTGGGAATAGTAAAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAACATTTTGTGCAATTATGCTTGCAACGGGATCCATCTGCACGCCCCTCTGCTGCAGAACTACTGGATCATCCTTTCGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTCAACTTTTCCATGGATGCATTTCCCTTTAGCTTTGATGGAAGCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGTGATGGAGATTATGTGACCAACCCAATAATCTCTTCCAGAGCTCCGAGGAGTCCTAGGGGAAATGCAAGATTAATCACATCCTTGCCCGTCTCTCCATGCTCGAGTCCATTACGGTCATATGGCCCCGCACACCAGAGCTGTTATCTTTCTCCACCTCACACGTCTTATATGGGGTTGGGTCAAAGTGGTTACAATTTGAATGAATACACATATAACACGAGACCGAACGGATTGTTCACCCTCGACCCTTCACGAGATTCATCGCTATTGAAAGTGCAGACTCCTGGTGGATCACCACGAAGACCTCTTTGA 1860 46.61 MPAWWVRKFSKNKEHHNHPTTFLSSSKSSSPKSEPKKPTDKPRSFDEVSAVIFSRSSPRSSRDLGSSGGADRGGSSGFSGFDSDSGDKSHPLPRPNTSALGIDQGVGIGSGSASVSSVSSCGSSDDHPSSHEQLQFGGYRWVSYLEVHMFEILFRGYADTRIETRPRSPGPGSRGPTSPTSPLNPRFCGMSLESPTGKLDDGKGRCHKLPLPPPPSSPTSPSSLTTQSKWKKGKLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITVLSQLSHPNIVRYYGSEMGEESLSVYLEYVSGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGEVKLVDFGMAKHFLVVESQVVMNTNGYSIAVDIWSLGCTVLEMATSKPPWNKYEGVAAIFKIGNSKDIPEIPDHLSNDAKHFVQLCLQRDPSARPSAAELLDHPFVQDAVTPRASDVNFSMDAFPFSFDGSQTPPLLDRHPNRKSISICDGDYVTNPIISSRAPRSPRGNARLITSLPVSPCSSPLRSYGPAHQSCYLSPPHTSYMGLGQSGYNLNEYTYNTRPNGLFTLDPSRDSSLLKVQTPGGSPRRPL 619
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 10810632 10817205 + Maker00013115 Lcy1g1154 623066
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1154 619 MobiDBLite consensus disorder prediction 1 132 - -
Lcy1g1154 619 MobiDBLite consensus disorder prediction 109 131 - -
Lcy1g1154 619 ProSiteProfiles Protein kinase domain profile. 230 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1154 619 MobiDBLite consensus disorder prediction 50 64 - -
Lcy1g1154 619 SMART serkin_6 230 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1154 619 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 30 480 IPR050538 -
Lcy1g1154 619 MobiDBLite consensus disorder prediction 598 619 - -
Lcy1g1154 619 ProSitePatterns Protein kinases ATP-binding region signature. 236 259 IPR017441 GO:0005524(InterPro)
Lcy1g1154 619 FunFam Predicted protein 226 490 - -
Lcy1g1154 619 MobiDBLite consensus disorder prediction 162 229 - -
Lcy1g1154 619 Pfam Protein kinase domain 231 473 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1154 619 Gene3D Transferase(Phosphotransferase) domain 1 226 490 - -
Lcy1g1154 619 SUPERFAMILY Protein kinase-like (PK-like) 228 562 IPR011009 -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g0258 Lcy-Chr13:2705695 Lcy1g1154 Lcy-Chr1:10810632 1.94E-76 dispersed
Lcy13g2029 Lcy-Chr13:39281776 Lcy1g1154 Lcy-Chr1:10810632 4.92E-88 dispersed
Lcy1g1008 Lcy-Chr1:8999405 Lcy1g1154 Lcy-Chr1:10810632 5.08E-87 dispersed
Lcy1g1154 Lcy-Chr1:10810632 Lcy6g0152 Lcy-Chr6:1424354 4.00E-96 dispersed
Lcy1g1154 Lcy-Chr1:10810632 Lcy12g0039 Lcy-Chr12:651534 3.97E-113 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65660 None None None None Lcy PK
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1154 K04421 - csv:101203907 876.7