Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1154 | ATGCCTGCTTGGTGGGTAAGAAAATTCAGTAAAAACAAGGAGCATCACAATCACCCCACTACCTTTCTCAGCTCCTCCAAGTCTTCTTCCCCCAAAAGTGAGCCTAAGAAGCCCACCGATAAGCCCAGGAGCTTCGATGAGGTCTCTGCTGTGATTTTCTCTCGCAGTTCCCCGAGGTCCAGCAGGGATCTCGGCTCTTCTGGGGGTGCTGATCGTGGCGGCTCTTCTGGGTTTTCTGGTTTTGACTCCGATAGTGGGGATAAGAGTCATCCTCTTCCTCGTCCTAATACTTCCGCCCTTGGGATTGATCAAGGAGTCGGGATTGGATCTGGGTCGGCTTCGGTTTCCAGTGTTAGCTCTTGTGGCTCTTCGGATGATCATCCATCTTCTCACGAACAGCTTCAATTTGGAGGTTACAGGTGGGTTTCTTATTTGGAAGTCCATATGTTTGAAATTTTATTCAGAGGATATGCCGATACCAGAATAGAGACCAGGCCAAGAAGTCCAGGTCCAGGATCAAGAGGACCCACCAGTCCTACATCGCCTCTCAACCCACGGTTCTGTGGCATGAGTCTAGAGTCTCCTACAGGCAAGCTAGATGATGGTAAGGGTCGATGTCATAAGCTGCCGCTTCCTCCTCCTCCAAGTTCTCCCACCAGCCCTTCTTCCTTGACCACGCAATCTAAGTGGAAGAAAGGAAAACTTCTAGGAAGAGGAACATTTGGGCATGTTTACCTTGGATTTAACAGTGTAAGTGGCCAAATGTGTGCAATTAAGGAGGTCAGGGTTATTAGTGATGACTCGACATCAAAGGAATGTCTCAAGCAATTGAACCAGGAGATAACTGTGCTCAGTCAGTTGTCGCATCCAAACATCGTCCGGTACTATGGTAGTGAAATGGGTGAAGAATCGCTCTCGGTGTACTTAGAATACGTCTCCGGTGGTTCAATTCACAAGTTGCTTCAGGAATATGGCGCCTTCAAGGAACCTGTTATAAGAAATTATACCCGAAAGATTCTTTCTGGGCTTGCTTATCTGCATGGGAGAAATACAGTGCACAGGGACATCAAAGGGGCAAACATCTTAGTGGATCCAAATGGCGAGGTCAAGTTGGTTGACTTTGGCATGGCAAAACATTTTCTTGTTGTGGAATCTCAGGTTGTGATGAATACAAATGGCTACAGTATTGCTGTAGATATTTGGAGTTTAGGGTGTACGGTTCTGGAAATGGCAACATCTAAACCGCCTTGGAACAAATACGAAGGGGTGGCTGCCATTTTCAAAATTGGGAATAGTAAAGACATTCCTGAAATTCCAGACCATCTCTCCAATGATGCTAAACATTTTGTGCAATTATGCTTGCAACGGGATCCATCTGCACGCCCCTCTGCTGCAGAACTACTGGATCATCCTTTCGTTCAAGATGCAGTAACACCAAGAGCATCTGATGTCAACTTTTCCATGGATGCATTTCCCTTTAGCTTTGATGGAAGCCAGACTCCGCCATTGTTAGATCGGCATCCAAACAGAAAAAGTATAAGCATATGTGATGGAGATTATGTGACCAACCCAATAATCTCTTCCAGAGCTCCGAGGAGTCCTAGGGGAAATGCAAGATTAATCACATCCTTGCCCGTCTCTCCATGCTCGAGTCCATTACGGTCATATGGCCCCGCACACCAGAGCTGTTATCTTTCTCCACCTCACACGTCTTATATGGGGTTGGGTCAAAGTGGTTACAATTTGAATGAATACACATATAACACGAGACCGAACGGATTGTTCACCCTCGACCCTTCACGAGATTCATCGCTATTGAAAGTGCAGACTCCTGGTGGATCACCACGAAGACCTCTTTGA | 1860 | 46.61 | MPAWWVRKFSKNKEHHNHPTTFLSSSKSSSPKSEPKKPTDKPRSFDEVSAVIFSRSSPRSSRDLGSSGGADRGGSSGFSGFDSDSGDKSHPLPRPNTSALGIDQGVGIGSGSASVSSVSSCGSSDDHPSSHEQLQFGGYRWVSYLEVHMFEILFRGYADTRIETRPRSPGPGSRGPTSPTSPLNPRFCGMSLESPTGKLDDGKGRCHKLPLPPPPSSPTSPSSLTTQSKWKKGKLLGRGTFGHVYLGFNSVSGQMCAIKEVRVISDDSTSKECLKQLNQEITVLSQLSHPNIVRYYGSEMGEESLSVYLEYVSGGSIHKLLQEYGAFKEPVIRNYTRKILSGLAYLHGRNTVHRDIKGANILVDPNGEVKLVDFGMAKHFLVVESQVVMNTNGYSIAVDIWSLGCTVLEMATSKPPWNKYEGVAAIFKIGNSKDIPEIPDHLSNDAKHFVQLCLQRDPSARPSAAELLDHPFVQDAVTPRASDVNFSMDAFPFSFDGSQTPPLLDRHPNRKSISICDGDYVTNPIISSRAPRSPRGNARLITSLPVSPCSSPLRSYGPAHQSCYLSPPHTSYMGLGQSGYNLNEYTYNTRPNGLFTLDPSRDSSLLKVQTPGGSPRRPL | 619 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 10810632 | 10817205 | + | Maker00013115 | Lcy1g1154 | 623066 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1154 | 619 | MobiDBLite | consensus disorder prediction | 1 | 132 | - | - | |
Lcy1g1154 | 619 | MobiDBLite | consensus disorder prediction | 109 | 131 | - | - | |
Lcy1g1154 | 619 | ProSiteProfiles | Protein kinase domain profile. | 230 | 473 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1154 | 619 | MobiDBLite | consensus disorder prediction | 50 | 64 | - | - | |
Lcy1g1154 | 619 | SMART | serkin_6 | 230 | 473 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1154 | 619 | PANTHER | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED | 30 | 480 | IPR050538 | - | |
Lcy1g1154 | 619 | MobiDBLite | consensus disorder prediction | 598 | 619 | - | - | |
Lcy1g1154 | 619 | ProSitePatterns | Protein kinases ATP-binding region signature. | 236 | 259 | IPR017441 | GO:0005524(InterPro) | |
Lcy1g1154 | 619 | FunFam | Predicted protein | 226 | 490 | - | - | |
Lcy1g1154 | 619 | MobiDBLite | consensus disorder prediction | 162 | 229 | - | - | |
Lcy1g1154 | 619 | Pfam | Protein kinase domain | 231 | 473 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lcy1g1154 | 619 | Gene3D | Transferase(Phosphotransferase) domain 1 | 226 | 490 | - | - | |
Lcy1g1154 | 619 | SUPERFAMILY | Protein kinase-like (PK-like) | 228 | 562 | IPR011009 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy13g0258 | Lcy-Chr13:2705695 | Lcy1g1154 | Lcy-Chr1:10810632 | 1.94E-76 | dispersed | |
Lcy13g2029 | Lcy-Chr13:39281776 | Lcy1g1154 | Lcy-Chr1:10810632 | 4.92E-88 | dispersed | |
Lcy1g1008 | Lcy-Chr1:8999405 | Lcy1g1154 | Lcy-Chr1:10810632 | 5.08E-87 | dispersed | |
Lcy1g1154 | Lcy-Chr1:10810632 | Lcy6g0152 | Lcy-Chr6:1424354 | 4.00E-96 | dispersed | |
Lcy1g1154 | Lcy-Chr1:10810632 | Lcy12g0039 | Lcy-Chr12:651534 | 3.97E-113 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
65660 | None | None | None | None | Lcy | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lcy1g1154 | K04421 | - | csv:101203907 | 876.7 |