Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1194 ATGGCAATAGACCAGGCCGAGCTTAGCACTGAGCAGGTTCTTACAAGGGACATTCCATGGGAGACATACATGACCACTAAACTTATTAGTGGAACAAGCCTTCAGCTGTTGAGGCGTTATGATAACAGACCAGAGAGTTACAGGGCACAATTGTTGGATGATGATGGTCCAGCTTATGTTCGGGTATTTGTTAGCATTTTACGCGATATATTTAAGGAAGAAACTGTGGAATATGTTCTAGCATTAATCGATGAAATGCTAACAGCAAACCCAAAAAGAGCAAGATTGTTCCATGATCATTCTCTTGCAAGCGAAGATGCTTACGAACCTTTCCTAAGATGGCTTTGGAAGGGCAATTGGTTCATACAGGAGAAGAGCTGTAAAATACTTGCTTTGATAGTGAGTGCTAGAAAAAAAACTGATGACGGAAGTTTTGCAAATGGTGATGCCTCAAACTCCAAGAAGAAAATTACTACCATTGATGATGTTTTGGATGGACTGGTGAAATGGCTTTGTGCACAGCTGAAGAATCCTTCACATCCTAGTCGTGCTGTACAGACTTCTATCAATTGCCTTGCAACTCTGCTGAAGGAACCAAAGGTCAGATCCTCCTTTGTCCAGGCAGATGGAGTGAAATTGCTCATTCCTTTGATTTCTCCTGCATCGACTCAACAATCTATTCAGCTTCTATATGAAACATGTCTTTGTGTTTGGCTCTTATCATATTACGAGCCGGCAATTGAATTCTTAGCCACTTCTAGATCCCTTCCAAGACTCATCGATGTTGTCAAGAGTTCCACAAAAGAGAAGGTTGTCCGGGTTGTTATTTTGACCTTGAGGAACTTACTATGCAAGGGGACATTTGGAGCTCAAATGGTGGGTCTCGGACTACCACAAGTTGTTCAAAGTTTGAAATCACAAGCATGGAGTGATGAGGACCTTTTGGAGGCTTTGAGTCAACTAGAAGAGGGGCTGAAAGATAATATCAAGAAACTAAGTTCTTTTGACAAGTATAAGCAAGAAGTCCTTCTCGGCCATCTTGACTGGTCTCCTATGCACAAAGATGTAAATTTTTGGCGTGAAAACATTACAAGCTTCGAAGAGAACGACTTCAAGATATTGAGGGTCCTAATCACCATTCTGGACACTTCCAGTGATCCAAGGGCTCTGGCAGTTGCTTGTTTTGATCTTTCCCAGTTCATTCAACACCATCCAGCTGGGAGAGTTATAGTGACAGACCTCAAGGCCAAGGAAAGAGTGATGAAACTGATGAATCATGAGAATGCTGAAGTTACCAAATATGCCCTTCTCTGCATACAAAGGCTCTTCCTAGGTGCCAAGTATGCCAGCTTTCTGCAGGCTTAA 1365 42.27 MAIDQAELSTEQVLTRDIPWETYMTTKLISGTSLQLLRRYDNRPESYRAQLLDDDGPAYVRVFVSILRDIFKEETVEYVLALIDEMLTANPKRARLFHDHSLASEDAYEPFLRWLWKGNWFIQEKSCKILALIVSARKKTDDGSFANGDASNSKKKITTIDDVLDGLVKWLCAQLKNPSHPSRAVQTSINCLATLLKEPKVRSSFVQADGVKLLIPLISPASTQQSIQLLYETCLCVWLLSYYEPAIEFLATSRSLPRLIDVVKSSTKEKVVRVVILTLRNLLCKGTFGAQMVGLGLPQVVQSLKSQAWSDEDLLEALSQLEEGLKDNIKKLSSFDKYKQEVLLGHLDWSPMHKDVNFWRENITSFEENDFKILRVLITILDTSSDPRALAVACFDLSQFIQHHPAGRVIVTDLKAKERVMKLMNHENAEVTKYALLCIQRLFLGAKYASFLQA 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11284752 11293009 + Maker00012793 Lcy1g1194 623106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1194 454 CDD VATPase_H 4 448 - -
Lcy1g1194 454 PANTHER V-TYPE PROTON ATPASE SUBUNIT H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy1g1194 454 FunFam V-type proton ATPase subunit H 345 446 - -
Lcy1g1194 454 Pfam V-ATPase subunit H 6 325 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy1g1194 454 Gene3D - 6 333 IPR011989 -
Lcy1g1194 454 PIRSF V-ATP_synth_H 2 453 IPR004908 GO:0000221(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Lcy1g1194 454 Gene3D - 345 446 IPR038497 -
Lcy1g1194 454 SUPERFAMILY ARM repeat 10 444 IPR016024 -
Lcy1g1194 454 SMART arm_5 243 284 IPR000225 GO:0005515(InterPro)
Lcy1g1194 454 SMART arm_5 198 242 IPR000225 GO:0005515(InterPro)
Lcy1g1194 454 SMART arm_5 404 444 IPR000225 GO:0005515(InterPro)
Lcy1g1194 454 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 400 407 IPR018506 GO:0020037(InterPro)
Lcy1g1194 454 Pfam V-ATPase subunit H 331 443 IPR011987 GO:0000221(InterPro)|GO:1902600(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1194 K02144 - csv:101217015 859.751