Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1200 ATGAACAACGGCAGCGCTCGGAAAACTCGACCGCCGCCGCAGAATCCGTCACCGGCTCCACCGGCCAAGCACCAGGCACTTTCTCAAGAGGAAGATTTCGTCGACGAAGATGTCTTCCTCGACGAGAATCTTCTCGACGAGGACGCTCTCATCCTCCGCGACATGGAGGAGCGTCAGGCCCTCGCTTCCCGTCTCTCCAAGTGGGCTCGTCCACCTCTTTCCCAGGATTACCTGTCCCAGTCGAAGAGCATTGCGTTTCAGCAATTGGAGATTGATTATGTGATCGGGGAAAGTCACAGAGAATTGTTGCCGAATTTGTCTGGCCCTGCCGCTATTCTCAGAATTTTTGGGGTTACGAAGGAAGAGTGCCCTTACTTTGAGCAGAGTTTCCAAATAATACGAGGATTTCTACTACCATCATTGGTTTTTGACGAACCAGGACATAGTGTCTGTTGCCATGTTCATGGATTTGAACCATACTTCTATATCAGTTGCCCTCCAGGAATGGGTCCTGATGATATCTCTCTTTTTCACCGAACACTTGAGGCTAGAATGAAGGAGGTAAATAGGAACAGCAAGGCTCCCAGTTTTGTGCGCCGTATTGAATTGGTGCAAAAGAGAAGTATTATGTATTACCAGCAGCAGACTTCTCAATCCTTTCTTAAAATCGTAGTTGCACTGCCAACAATGGTCACCAGCTGCCGTGGTATTCTTGACAGAGGCATACAAATCGATGGCTTTGGTATGAAGAGCTTCATGACATACGAAAGCAATGTGCTTTTTGCCCTCCGTTTTATGATTGATTGTAATGTTGTTGGTGGAAACTGGATTGAGGTTCCTGTGGGAAAATATAAGAAAACTGTTAGAAATTTATCATATTGCCAATTGGAGTTTGATTGCCTATATTCAGACTTGATCAGCCATGCCCCAGAAGGGGAATTTTCTAAAATGGCTCCATTTCGGATATTGAGTTTTGATATTGAGTGTGCAGGGCGTAAAGGCCATTTTCCTGAGCCTACCCAGGATCCCGTGATTCAGGTGGCAAACCTAGTTACTTTGCAGGGAGAGGACCAACCATTTATTCGCAATGTCATGACTCTTAACTCTTGCTCTCCTATTGCGGGCGTTGATGTCTTATCATTTGATACAGAACGTGAAGTTTTGCTGGCTTGGAGGGATCTAATTCGTGAAGTAGACCCTGATATAATAATTGGATATAACATCTGCAAATTTGATTTGCCATATCTAATTGAGAGAGCCGAGGCACTGAAAATAGCAGAATTTCCATTATTGGGTCGGATCAGGAATAGTAAAGTTCGTGTCAAAGATACAACTTTTTCTTCAAGACAGCTTGGAACAAGGGAGAGTAAAGAAATAACGTTGGAAGGAAGAGTTCAATTTGATTTACTTCAGGCAATGCAACGAGATTATAAATTAAGTTCGTACTCATTGAATTCTGTTTCTTCACATTTCCTTTCTGAACAGAAAGAGGATGTCCACCATTCAATAATATCAGATCTTCAAAATGGTAATGCGGAAACACGGAGACGGCTTGCTGTTTATTGTTTAAAGGATGCTTATCTTCCACAACGGCTTTTAGATAGACTGATGTTCATTTACAATTATGTGGAGATGGCTCGAGTGACTGGCATTCCTATTTCTTTTCTTCTTTCAAGAGGGCAAAGCATCAAGGTACTCTCTCAACTGCTTAGGAAGGCCAAACAGAAAAACCTTGTTATTCCGAATGCTAAACAGGCAGGATCTGATCAAGGAACCTACGAGGGTGCTACTGTTTTGGAAGCAAGGGCTGGGTTCTATGAGAAGCCCATTGCTACGCTGGATTTTGCATCACTGTATCCATCCATTATGATGGCATATAATTTGTGTTATTGCACTCTGGTGACTCCAGAAGACATTCGCAAACTAAACCTGCCCCCTGAACATTTCAATAAAACCCCATCTGGTGAGATATTTGTCAAGCCAAATTTACAGAAGGGGATACTTCCTGAAATATTAGAAGAACTATTGACTGCACGGAAAAGAGCAAAAGCAGATTTGAAGGTAATCACATTGCTCTTTCCAGCATTGCCTTGA 2094 43.12 MNNGSARKTRPPPQNPSPAPPAKHQALSQEEDFVDEDVFLDENLLDEDALILRDMEERQALASRLSKWARPPLSQDYLSQSKSIAFQQLEIDYVIGESHRELLPNLSGPAAILRIFGVTKEECPYFEQSFQIIRGFLLPSLVFDEPGHSVCCHVHGFEPYFYISCPPGMGPDDISLFHRTLEARMKEVNRNSKAPSFVRRIELVQKRSIMYYQQQTSQSFLKIVVALPTMVTSCRGILDRGIQIDGFGMKSFMTYESNVLFALRFMIDCNVVGGNWIEVPVGKYKKTVRNLSYCQLEFDCLYSDLISHAPEGEFSKMAPFRILSFDIECAGRKGHFPEPTQDPVIQVANLVTLQGEDQPFIRNVMTLNSCSPIAGVDVLSFDTEREVLLAWRDLIREVDPDIIIGYNICKFDLPYLIERAEALKIAEFPLLGRIRNSKVRVKDTTFSSRQLGTRESKEITLEGRVQFDLLQAMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQRLLDRLMFIYNYVEMARVTGIPISFLLSRGQSIKVLSQLLRKAKQKNLVIPNAKQAGSDQGTYEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVTPEDIRKLNLPPEHFNKTPSGEIFVKPNLQKGILPEILEELLTARKRAKADLKVITLLFPALP 697
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11351031 11372814 + Maker00013054 Lcy1g1200 623112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1200 697 Pfam DNA polymerase family B, exonuclease domain 254 487 IPR006133 -
Lcy1g1200 697 FunFam DNA polymerase 358 592 - -
Lcy1g1200 697 SUPERFAMILY DNA/RNA polymerases 560 688 IPR043502 -
Lcy1g1200 697 Gene3D Palm domain of DNA polymerase 580 689 IPR023211 -
Lcy1g1200 697 FunFam DNA polymerase 123 290 - -
Lcy1g1200 697 SUPERFAMILY Ribonuclease H-like 143 557 IPR012337 -
Lcy1g1200 697 CDD DNA_polB_delta_exo 315 543 - -
Lcy1g1200 697 Pfam DNA polymerase family B 551 688 IPR006134 GO:0000166(InterPro)|GO:0003677(InterPro)
Lcy1g1200 697 PANTHER DNA POLYMERASE CATALYTIC SUBUNIT 66 687 IPR050240 GO:0003887(PANTHER)|GO:0006261(PANTHER)|GO:0006287(PANTHER)|GO:0006297(PANTHER)|GO:0008296(PANTHER)|GO:0043625(PANTHER)|GO:0045004(PANTHER)
Lcy1g1200 697 SMART polmehr3 318 695 IPR006172 GO:0000166(InterPro)|GO:0003676(InterPro)|GO:0003887(InterPro)
Lcy1g1200 697 Gene3D DNA Polymerase, chain B, domain 1 127 291 - -
Lcy1g1200 697 MobiDBLite consensus disorder prediction 1 30 - -
Lcy1g1200 697 Gene3D - 319 537 IPR036397 GO:0003676(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1200 Lcy-Chr1:11351031 Lcy4g1846 Lcy-Chr4:44518036 1.26E-38 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1200 K02327 - csv:101219332 1239.94