Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1205 ATGAACAACGGCACGGCGGACAGCGGCGGATTTCTGTCCTCGAGCAACATCGGCGGATTCGGATACGGAATCGGCGTCTCCTTAGGGCTTTTGATTCTCATCACTACAATCCTCCTCGCTTCCTATTACTGCACCAGAACCGGCCTGTCGACCACCGCTGTGATTCAGAGGAACGCCAACCGCTCGCCGCAGGCGCCGGAGGAAGCCGTCGTCGTCGACATCGGACTCGATCAGGAGACGATTACGAGTTATCCGAAATTGCTCTATTCGGAGGCGAAGCTTCAGAAGAACGATTCTACTGCTTCGTGTTGCTCAATCTGTTTGGCCGATTACAAGAACTCTGATGTTCTTCGCCTTTTGCCTGATTGCGGCCATCTCTTTCACCTCAAGTGCGTCGATCCGTGGCTGAGGCTTCACCCGACCTGTCCGGTTTGCCGGACCTCGCCGATTCCGACGCCGTTGTCCACTCCTCTGGCGGAGCAAGTTCCATTGGCGAGTCGGCGCGATTGA 510 56.27 MNNGTADSGGFLSSSNIGGFGYGIGVSLGLLILITTILLASYYCTRTGLSTTAVIQRNANRSPQAPEEAVVVDIGLDQETITSYPKLLYSEAKLQKNDSTASCCSICLADYKNSDVLRLLPDCGHLFHLKCVDPWLRLHPTCPVCRTSPIPTPLSTPLAEQVPLASRRD 169
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11404976 11405485 - Maker00012203 Lcy1g1205 623117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1205 169 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 14 163 IPR045899 -
Lcy1g1205 169 CDD RING-H2_EL5-like 103 146 - -
Lcy1g1205 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 150 IPR013083 -
Lcy1g1205 169 FunFam E3 ubiquitin-protein ligase ATL6 64 151 - -
Lcy1g1205 169 SUPERFAMILY RING/U-box 80 151 - -
Lcy1g1205 169 Pfam Ring finger domain 103 146 IPR001841 -
Lcy1g1205 169 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Lcy1g1205 169 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1205 Lcy-Chr1:11404976 Lcy5g0504 Lcy-Chr5:5485044 1.04E-60 dispersed
Lcy10g1693 Lcy-Chr10:41327838 Lcy1g1205 Lcy-Chr1:11404976 2.78E-17 transposed
Lcy11g2006 Lcy-Chr11:43679598 Lcy1g1205 Lcy-Chr1:11404976 3.49E-32 transposed
Lcy1g1205 Lcy-Chr1:11404976 Lcy5g0512 Lcy-Chr5:5649087 1.04E-60 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1205 - - - 0.0