Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1206 ATGAACGATCTGTTCTCCTCCGATTCCTTCCGCCGCGAGCAGCGCCACCACGCCGTCGAGATGGAGGCCGCCGCCGCGCCGTCGTCAACGACGATCAATCTCAACGGCTTCTTCGAAGACGTGGAGTCCGTGAAGGCGGAATTGACGGAGCTCGAACGCCTCCATCGAAACCTCCAGAACTCTCACGAACAGAGCAAGACTCTGCACAACTCGAAGGCGGTTAAGGATCTTCGATCTCGAATGGAATCGGATGTGACTCTGGCTCTGAAGAAGGCTAGGTTTATCAAGCTCCGATTGGAGGATCTCGATCGGTCCAATGCCGAGAACCGGAATCTTCCTGGTTGCGGCTATGGCTCCTCCGCCGACCGGTCCAGAACTTCGGTCGTCAATGGATTGAGGAAGAAGCTGTGTGATTCGATGGAGAGTTTCAACAGATTGAGAGAGGAGATCTCGTCGACGTATAAGGAGACAATTGAACGAAGATATTTCACCATTACAGGGGAAAATCCGGATGAGAAGACTGTTGATCTCTTGATCTCTACAGGTGAAAGCGAAACATTCCTTCAAAAAGCAATACAAAAGCAAGGAAGAGGCAGAGTTTTGGAAACGATCCAAGAGATTCAAGAACGGCACGACGCAGTGAAGGACATGGAGAGGAATCTGCGAGAGCTGCACCAAGTGTTCATGGACATGGCAGTGCTGGTCCAAGCGCAGGGCCAGCATTTGAACGACATTGAGAGCCAAGTGACTCGAGCCAACTCGGTCATCAGGCACGGCACCACCGAGCTACAGAAGGCCAGATTCTACCAAAAAAACACCCGCAAATGGATCTGCATAGGCGTCTCTGTTTTTCTAGTCATCCTCTTGATCATCATCATTTCCGTCGTCGTCAAGAATAAGAACAACAACAACGGATAG 918 51.09 MNDLFSSDSFRREQRHHAVEMEAAAAPSSTTINLNGFFEDVESVKAELTELERLHRNLQNSHEQSKTLHNSKAVKDLRSRMESDVTLALKKARFIKLRLEDLDRSNAENRNLPGCGYGSSADRSRTSVVNGLRKKLCDSMESFNRLREEISSTYKETIERRYFTITGENPDEKTVDLLISTGESETFLQKAIQKQGRGRVLETIQEIQERHDAVKDMERNLRELHQVFMDMAVLVQAQGQHLNDIESQVTRANSVIRHGTTELQKARFYQKNTRKWICIGVSVFLVILLIIIISVVVKNKNNNNG 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11408108 11411422 - Maker00012734 Lcy1g1206 623118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1206 305 ProSitePatterns Syntaxin / epimorphin family signature. 210 249 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Lcy1g1206 305 PANTHER SYNTAXIN 36 287 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0005886(PANTHER)|GO:0006886(PANTHER)|GO:0006887(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Lcy1g1206 305 SMART SynN_4 29 155 IPR006011 GO:0016020(InterPro)
Lcy1g1206 305 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 31 161 - -
Lcy1g1206 305 Gene3D - 32 164 - -
Lcy1g1206 305 SUPERFAMILY t-snare proteins 33 259 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Lcy1g1206 305 CDD SynN 34 191 IPR006011 GO:0016020(InterPro)
Lcy1g1206 305 Pfam Syntaxin 37 239 IPR006011 GO:0016020(InterPro)
Lcy1g1206 305 Coils Coil 34 68 - -
Lcy1g1206 305 Pfam SNARE domain 242 292 IPR000727 -
Lcy1g1206 305 SMART tSNARE_6 199 266 IPR000727 -
Lcy1g1206 305 CDD SNARE_syntaxin1-like 203 265 - -
Lcy1g1206 305 Gene3D - 199 298 - -
Lcy1g1206 305 FunFam Syntaxin 132 197 297 - -
Lcy1g1206 305 Coils Coil 204 224 - -
Lcy1g1206 305 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 204 266 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1206 Lcy-Chr1:11408108 Lcy5g2615 Lcy-Chr5:48884730 1.05E-139 dispersed
Lcy11g0712 Lcy-Chr11:20286431 Lcy1g1206 Lcy-Chr1:11408108 1.34E-67 transposed
Lcy1g1206 Lcy-Chr1:11408108 Lcy5g0507 Lcy-Chr5:5585492 1.05E-139 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1206 K08486 - csv:101213443 468.774