Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1210 ATGGGGGTTCCACAGACGATGGAAATCCTGAGCGAGAGAGCCGCACTTGTCAGAGAGTCGCTGCAGAAGAGCCAGAATGTCACCGAGAGCATGGTCTCCATTCTTGGCTCCTTCGACTCCCGTCTCTCCGCCCTCGAAACCGCAATGCGGCCTACTCAGATAAGAACTCATTCAATTCGGAGGGCGCATGAGAATATTGACAAGACTTTGAAGACTGCAGAAAGTATGCTAGCTCAGTTTGATCTTACACGCAAGGTTGATATCTCTTACCTTCTCATTCCTTCTTGCTTATTTATCATTTTGTGGAGAGGAGAGGCACGGCTTCTGATTTGCTGCTTGTTGTTTATATTATATGCGTCTTGTACTGTAGCAATTGTAGCCGAGGCTAAAATACTCAGGGGGCCACATGAGGACTTAGAAATGTACTTGGAAGCAATCGATCAACTACGAAGTACAAATCGCTTCTTTACTGGGAACAAAAATTTCAAAAGTAACGATGCTATTCTTATCCATACAAGCAACTTGCTTGTTAAAGCCATTTCAAAACTGGAAGATGAGTTCAGACAGCTTTTAACAAATTACAGTAAGCCAGTGGAACCTGATCGTCTTTTCGATTGCCTCCCCAACTCTTTGCGTCCATCATCAGCCTCTGCGCAGCAAGGTGATAGTGGTAGCAAAAATAATTCTGACCATCACAACAAAAGCTTAGAAGCTGCCATCTTCATTCCCCCAACTCTTATTCCTCCCAGGGTTCTTCCGTTGTTGCATGATTTGGCCCAACAAATGATTCTGGCTGGCCATCAGCAGCAACTGTTTAGAATATACAGGGATACTCGCGCTTCAGTTTTAGAACAGAGTCTTAGGAAATTAGGTGTTGAGAGGCTGAGCAAGGATGATGTCCAGAAAATGCAGTGGGAGGCTCTTGAAGCTAAGATTGGGAACTGGATACATTACATGCGCATTGCTGTCAAACTGCTGTTTGCTGGGGAAAGGAAAATCTGTGATCAAATATTTGATGGTGCAGACTCTCTCCAGGATCAATGCTTCGCAGATGTGACTGCAAACAGTGTGTCAGTGCTACTAAGTTTTGGAGAGGCAATTGCCAAAAGCAAGAGATCTCCAGAAAAATTGTTTGTTCTTTTAGACATGTATGAAATAATGCGAGAACTGCAATCTGAGCAGATTGAAACACTTTTTGGAAGTAAAACATGCATTGAAATGCGGGATTCTGCATTGAGCTTAACAAGACGTCTTGCTGAGACAGCTCAAGAGACTTTTGTTGATTTTGAAGAAGCCGTAGAAAAAGATGCCACAAAAACTGCTGTTCTTGATGGGACTGTTCATCCCTTGACTAGTTATGTGATAAACTACGTCAAGTTTTTATTTGACTACCAATCTACTTTGAAGCAACTATTTCTAGACTTTGAGGCTGGTGATCCAGATGCTCAGTTAGCAATAGTAACTACAAGAATTATGCAGGCCCTTCAGACTAATCTTGATGGAAAATCTAAGCAATATAGGGATCCTGCATTAACTCAGTTATTTCTGATGAACAATATTCACTATATAGTGAGATCTGTCCGAAGATCAGAGGCAAAAGATTTGTTGGGTGATGACTGGGTGCAGATACATCGAAGAATTGTGCAACAGCATGCAAATCAATATAAGCGGATTTCTTGGGCAAAGATTTTGCAGTGCCTCACTGTTCAGGCCTCAGGTAGTGGTGGTGCTTCGGGAGATGCTAGCAGTGGACTCTCAAGAGCTATGGTGAAAGATAGGTTTAAGACTTTTAACATCCAATTTGAAGAGCTTCATCAACGGCAATCTCAATGGACAGTTCCTGACAGTGAGTTGCGGGAGTCATTGAGGTTGGCAGTTGCTGAAGTTTTATTGCCTGCCTACCGATCCTTCATCAAGCGTTTCGGGCATGTTCTCATTGCTGAACTTTAA 1950 42.87 MGVPQTMEILSERAALVRESLQKSQNVTESMVSILGSFDSRLSALETAMRPTQIRTHSIRRAHENIDKTLKTAESMLAQFDLTRKVDISYLLIPSCLFIILWRGEARLLICCLLFILYASCTVAIVAEAKILRGPHEDLEMYLEAIDQLRSTNRFFTGNKNFKSNDAILIHTSNLLVKAISKLEDEFRQLLTNYSKPVEPDRLFDCLPNSLRPSSASAQQGDSGSKNNSDHHNKSLEAAIFIPPTLIPPRVLPLLHDLAQQMILAGHQQQLFRIYRDTRASVLEQSLRKLGVERLSKDDVQKMQWEALEAKIGNWIHYMRIAVKLLFAGERKICDQIFDGADSLQDQCFADVTANSVSVLLSFGEAIAKSKRSPEKLFVLLDMYEIMRELQSEQIETLFGSKTCIEMRDSALSLTRRLAETAQETFVDFEEAVEKDATKTAVLDGTVHPLTSYVINYVKFLFDYQSTLKQLFLDFEAGDPDAQLAIVTTRIMQALQTNLDGKSKQYRDPALTQLFLMNNIHYIVRSVRRSEAKDLLGDDWVQIHRRIVQQHANQYKRISWAKILQCLTVQASGSGGASGDASSGLSRAMVKDRFKTFNIQFEELHQRQSQWTVPDSELRESLRLAVAEVLLPAYRSFIKRFGHVLIAEL 649
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11440877 11449234 + Maker00013397 Lcy1g1210 623122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1210 649 Gene3D Exocyst complex component Exo70 119 647 - -
Lcy1g1210 649 PANTHER EXOCYST COMPLEX PROTEIN EXO70 13 643 IPR004140 GO:0000145(InterPro)|GO:0000145(PANTHER)|GO:0006887(InterPro)|GO:0006887(PANTHER)
Lcy1g1210 649 Pfam Exocyst complex component Exo70 N-terminal 127 192 - -
Lcy1g1210 649 SUPERFAMILY Cullin repeat-like 127 642 IPR016159 -
Lcy1g1210 649 Pfam Exo70 exocyst complex subunit C-terminal 314 644 IPR046364 GO:0000145(InterPro)|GO:0005546(InterPro)|GO:0006887(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1210 Lcy-Chr1:11440877 Lcy7g0563 Lcy-Chr7:4949704 2.60E-292 dispersed
Lcy1g1210 Lcy-Chr1:11440877 Lcy2g0063 Lcy-Chr2:462483 6.46E-92 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1210 K07195 - csv:105436018 1083.55