Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1256 ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGCGCCAATAATTGCGGCTTCTTCGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACATCCGTCTCAAAGAACAAGAACAAGCGTCCACCAAATCCACCATCGAAGCCGCTCTCTCAGCCTCATCTCCTTCTCCTCTCACCTCTTCCCCAATCGATCCTCCTCCTGTTTCCCCTGTTGTAGCCTTGTCCTCGCCGGACACAGATCTGACCATCCCGCCCCTTGCGGCGGCCGGATCTGAGGCGTTGAACCAGTCGAGCCCCAACCCTAACCCGAGCCCGAACCGGTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCGATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGACAAACTGGAGAGGATTTGA 525 56.76 MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQASTKSTIEAALSASSPSPLTSSPIDPPPVSPVVALSSPDTDLTIPPLAAAGSEALNQSSPNPNPSPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 11895814 11896338 - Maker00012239 Lcy1g1256 623168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1256 174 ProSiteProfiles Zinc finger AN1-type profile. 109 155 IPR000058 GO:0008270(InterPro)
Lcy1g1256 174 SMART AN1_Zf_4 115 152 IPR000058 GO:0008270(InterPro)
Lcy1g1256 174 PANTHER AN1-TYPE ZINC FINGER PROTEIN 11 174 IPR050652 -
Lcy1g1256 174 Pfam AN1-like Zinc finger 115 151 IPR000058 GO:0008270(InterPro)
Lcy1g1256 174 MobiDBLite consensus disorder prediction 48 65 - -
Lcy1g1256 174 Pfam A20-like zinc finger 14 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy1g1256 174 Gene3D - 1 63 - -
Lcy1g1256 174 FunFam Zinc finger AN1-type containing 6 93 170 - -
Lcy1g1256 174 Gene3D - 94 170 IPR035896 -
Lcy1g1256 174 MobiDBLite consensus disorder prediction 98 115 - -
Lcy1g1256 174 SUPERFAMILY AN1-like Zinc finger 102 169 IPR035896 -
Lcy1g1256 174 SMART A20_3 13 37 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy1g1256 174 MobiDBLite consensus disorder prediction 46 115 - -
Lcy1g1256 174 ProSiteProfiles Zinc finger A20-type profile. 10 44 IPR002653 GO:0003677(InterPro)|GO:0008270(InterPro)
Lcy1g1256 174 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 15 60 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1256 Lcy-Chr1:11895814 Lcy8g1998 Lcy-Chr8:46262538 3.28E-56 dispersed
Lcy1g1256 Lcy-Chr1:11895814 Lcy12g1743 Lcy-Chr12:38184070 5.53E-50 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1256 - - - 0.0