Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lcy1g1256 | ATGGCGGAAGAGCACAGATGCCAAGCACCTGAAGGTCACCGTCTCTGCGCCAATAATTGCGGCTTCTTCGGCAGTCCAGCCACCATGGATCTCTGCTCCAAATGTTACAGAGACATCCGTCTCAAAGAACAAGAACAAGCGTCCACCAAATCCACCATCGAAGCCGCTCTCTCAGCCTCATCTCCTTCTCCTCTCACCTCTTCCCCAATCGATCCTCCTCCTGTTTCCCCTGTTGTAGCCTTGTCCTCGCCGGACACAGATCTGACCATCCCGCCCCTTGCGGCGGCCGGATCTGAGGCGTTGAACCAGTCGAGCCCCAACCCTAACCCGAGCCCGAACCGGTGTTCGTCGTGCCGTAAGAAGGTGGGTTTGACCGGGTTCAGATGCAGATGCGGAACCACGTTCTGTGGGGCTCATAGGTACCCGGAGAAACACGGCTGCACCTTCGATTTCAAGTCGATCGGAAGAGAGGAGATCGCTCGAGCGAACCCCGTCGTCAAAGCCGACAAACTGGAGAGGATTTGA | 525 | 56.76 | MAEEHRCQAPEGHRLCANNCGFFGSPATMDLCSKCYRDIRLKEQEQASTKSTIEAALSASSPSPLTSSPIDPPPVSPVVALSSPDTDLTIPPLAAAGSEALNQSSPNPNPSPNRCSSCRKKVGLTGFRCRCGTTFCGAHRYPEKHGCTFDFKSIGREEIARANPVVKADKLERI | 174 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
1 | 11895814 | 11896338 | - | Maker00012239 | Lcy1g1256 | 623168 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lcy1g1256 | 174 | ProSiteProfiles | Zinc finger AN1-type profile. | 109 | 155 | IPR000058 | GO:0008270(InterPro) | |
Lcy1g1256 | 174 | SMART | AN1_Zf_4 | 115 | 152 | IPR000058 | GO:0008270(InterPro) | |
Lcy1g1256 | 174 | PANTHER | AN1-TYPE ZINC FINGER PROTEIN | 11 | 174 | IPR050652 | - | |
Lcy1g1256 | 174 | Pfam | AN1-like Zinc finger | 115 | 151 | IPR000058 | GO:0008270(InterPro) | |
Lcy1g1256 | 174 | MobiDBLite | consensus disorder prediction | 48 | 65 | - | - | |
Lcy1g1256 | 174 | Pfam | A20-like zinc finger | 14 | 37 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Lcy1g1256 | 174 | Gene3D | - | 1 | 63 | - | - | |
Lcy1g1256 | 174 | FunFam | Zinc finger AN1-type containing 6 | 93 | 170 | - | - | |
Lcy1g1256 | 174 | Gene3D | - | 94 | 170 | IPR035896 | - | |
Lcy1g1256 | 174 | MobiDBLite | consensus disorder prediction | 98 | 115 | - | - | |
Lcy1g1256 | 174 | SUPERFAMILY | AN1-like Zinc finger | 102 | 169 | IPR035896 | - | |
Lcy1g1256 | 174 | SMART | A20_3 | 13 | 37 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Lcy1g1256 | 174 | MobiDBLite | consensus disorder prediction | 46 | 115 | - | - | |
Lcy1g1256 | 174 | ProSiteProfiles | Zinc finger A20-type profile. | 10 | 44 | IPR002653 | GO:0003677(InterPro)|GO:0008270(InterPro) | |
Lcy1g1256 | 174 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 15 | 60 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lcy1g1256 | Lcy-Chr1:11895814 | Lcy8g1998 | Lcy-Chr8:46262538 | 3.28E-56 | dispersed | |
Lcy1g1256 | Lcy-Chr1:11895814 | Lcy12g1743 | Lcy-Chr12:38184070 | 5.53E-50 | transposed |
Pathway information
