Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1264 ATGCACTCCACGAACGCCGCCTTGCGCTGCCGCTGCATACCCACGAACGTTGCTTCCAATCGAACGCCGAACGCCACCTCCAATCAAACGCGATACGAACCCACGAACGGAGATCTGAACAGAGAGGGGAGAAACGAACAGGGATTCTTACTAGAGGAAAAACGAAATGAAATGAGAGGGTTTGTATCGCGTGCTCGAAATGGTGCTCAAACAGGGGAAAAACGAAATGATAAAAGAGGATCTGCATCCCCTCTGCATTCAGATCTCCGTTTGTGGGTTTGTATCGCGTTCGGCGTTCGTGGGTATGCAGGCGACGGCGCAAGGCGGCGTTCGTGGAGGGATCAGGACGGTGTCGTTTCGGTGTTTCCGAGCAGAAAGCAGAGAGTTCTAACGACGAGATCGTGGGACTTTCTGGGACTGAATCATCGCTCCAAACGCAACCCTAAAATCGAGTCTAATATCATCGTCGCCGTTTTGGATACGGGAATTTGGATAAATAGTCCTAGTTTCAGCGATGAAGGTTACGGTCCACCTCCGCCTAAATGGAAGGGCAAATGCGTCACTGGTCCCAACTTCACCGCCTGCAACAACAAAGTGATCGGTGCGAATTACTTCGATCTCGACAACGGAAGCACATATCCAGAGACCAGCGTCGCCGACACGGTGGGGCATGGCTCTCACACGGCGTCCACGGTCGCAGGCTCGGCGGTGCCCGGGGCCAGCTTGTACGGTCTGGCAAAAGGGACGGCCCGCGGCGGCGTCCCTTCGGCTCGAATTGCTGTCTACAAAGTGTGCTGGAGTGTTTTCTGCAGCGAAATGGACGTACTTGCAGGCTTCGATGAGGCCATCGCCGACGGCGTCGATTTGATTTCCGTCTCCATAGGCTCGCCGGCGATGGACTTCTTCAGGGACAGTCAGGCCATCGGGGCTTTTCATGCGATGAAGAAGGGAATTTTGACGTCCTGCGCCGCCGGCAACGACGGCCCTGAATTGTCCACCGTCGAGAATGTCGCCCCCTGGATTATGACCGTCGCTGCAACCGCCATTGATAGACGATTCGTCACTGCTTTCAAACTCGGTAATGGCAAGAAATTTACTGGATTCTCCATCAACACTTTCTCGCCCAGGAAACAAATGTACTCTCTTACAAGTGGGGCCAAAGCGTCCTCTGGCACAACCAACCAGGGGAACGCAAGGTACGAAATTCGGAAAAATACATTTTTTTTGAAATGGGATGACAGTGCTTGTGATGTTGAAGCTCTAAGCCAAAGCAAGGTGAAGGGAAGGATAGTGTATTGCTTGAAACCTTATACAGATCCCAACATCGAATCCTTAGGAGGCTCTGGAGTCCTTCAACTGCTTGATCAACAAATGGATTATTCCTCCCTTTTGCTTCTTCCTGGGGCTGCCATCCCTCCAGTCTCTGGCAAATATATTGATCTTTACATCAACTCCACCAAGAATCCAAAAGCTGTCATTTATAAAAGTAAAACCATCAAAACTGCTGCTCCTTTTGTTGCCTCTTTCTCATCCAGAGGGCCTCAGTCTATCAGCCGTAACATCCTCAAGCCTGATCTTGCTGCACCAGGGATAAACATCTTGGCTGCTTACACAAAGTTGGCCAGTTTGACAGGGCAAATGTCAGACAGTAGATATAGTTTATACAGTGTACTCTCAGGTACATCCATGGCTTGTCCTCATGCCACTGCCGCCGCTGCCTATGTTAAGTCATTCCACCCTGACTGGTCTCCGGCTGCGGTCAAGTCTGCTCTCATGACTACCGCAACTCCGATGAAGATCAAATCCAAGGATGCTGAGTTTGGCTCTGGAGCAGGACAAATAAATCCAACCAAGGCGGTCCATCCTGGCCTTGTCTATGACATTTCGCTCAAGTCGTACATCTCTTTCCTCTGCAAAGAAGGCTACAACAGCACAACAATTGGCTTACTTGTTGGTAGCAAGAAGTATAACTGCTCCAAGATCAAACCTGCACAAGGCACCGATGGACTCAACTACCCTACAATGCACAAACAACTCTTAGATCCTAGTTCTTCCATTGCGGCAGTCTTTTATCGGACAGTGACTCATGTCGGGTACGGTACATCATTGTACAGGGCAAATATATCATCCCCAGATGGCCTCTCTGTCAAAGTTTTTCCAAACACTCTAAATTTTGTTAAGTTACATGAAAGTAAGACATTTAAAGTTGTGGTGAAGGGCAAACCTATGCCAGATGGAACACAGATTCTATCAGCTTTACTTGAATGGAACGACTCTAAACACATAGTTAGAAGCAATATCGTCATCTACAGACAGTTATTCATGTAA 2328 49.18 MHSTNAALRCRCIPTNVASNRTPNATSNQTRYEPTNGDLNREGRNEQGFLLEEKRNEMRGFVSRARNGAQTGEKRNDKRGSASPLHSDLRLWVCIAFGVRGYAGDGARRRSWRDQDGVVSVFPSRKQRVLTTRSWDFLGLNHRSKRNPKIESNIIVAVLDTGIWINSPSFSDEGYGPPPPKWKGKCVTGPNFTACNNKVIGANYFDLDNGSTYPETSVADTVGHGSHTASTVAGSAVPGASLYGLAKGTARGGVPSARIAVYKVCWSVFCSEMDVLAGFDEAIADGVDLISVSIGSPAMDFFRDSQAIGAFHAMKKGILTSCAAGNDGPELSTVENVAPWIMTVAATAIDRRFVTAFKLGNGKKFTGFSINTFSPRKQMYSLTSGAKASSGTTNQGNARYEIRKNTFFLKWDDSACDVEALSQSKVKGRIVYCLKPYTDPNIESLGGSGVLQLLDQQMDYSSLLLLPGAAIPPVSGKYIDLYINSTKNPKAVIYKSKTIKTAAPFVASFSSRGPQSISRNILKPDLAAPGINILAAYTKLASLTGQMSDSRYSLYSVLSGTSMACPHATAAAAYVKSFHPDWSPAAVKSALMTTATPMKIKSKDAEFGSGAGQINPTKAVHPGLVYDISLKSYISFLCKEGYNSTTIGLLVGSKKYNCSKIKPAQGTDGLNYPTMHKQLLDPSSSIAAVFYRTVTHVGYGTSLYRANISSPDGLSVKVFPNTLNFVKLHESKTFKVVVKGKPMPDGTQILSALLEWNDSKHIVRSNIVIYRQLFM 775
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
1 11957413 11962151 + Maker00013308 Lcy1g1264 623176
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1264 775 Pfam Fibronectin type-III domain 670 769 IPR041469 -
Lcy1g1264 775 SUPERFAMILY Subtilisin-like 140 620 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy1g1264 775 ProSitePatterns Serine proteases, subtilase family, aspartic acid active site. 156 166 IPR023827 -
Lcy1g1264 775 MobiDBLite consensus disorder prediction 60 84 - -
Lcy1g1264 775 Gene3D - 637 772 - -
Lcy1g1264 775 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 113 767 IPR045051 -
Lcy1g1264 775 PRINTS Subtilisin serine protease family (S8) signature 220 233 IPR015500 -
Lcy1g1264 775 PRINTS Subtilisin serine protease family (S8) signature 151 170 IPR015500 -
Lcy1g1264 775 PRINTS Subtilisin serine protease family (S8) signature 559 575 IPR015500 -
Lcy1g1264 775 Gene3D Peptidase S8/S53 domain 153 633 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Lcy1g1264 775 MobiDBLite consensus disorder prediction 70 84 - -
Lcy1g1264 775 MobiDBLite consensus disorder prediction 17 43 - -
Lcy1g1264 775 Pfam Subtilase family 152 610 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Lcy1g1264 775 MobiDBLite consensus disorder prediction 17 36 - -
Lcy1g1264 775 CDD Peptidases_S8_3 131 596 IPR034197 -
Lcy1g1264 775 ProSitePatterns Serine proteases, subtilase family, serine active site. 560 570 IPR023828 -
Lcy1g1264 775 CDD PA_subtilisin_like 357 493 - -
Lcy1g1264 775 ProSiteProfiles Serine proteases, subtilase domain profile. 134 620 - -
Lcy1g1264 775 Gene3D - 350 499 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1264 Lcy-Chr1:11957413 Lcy7g1237 Lcy-Chr7:15436047 1.81E-222 dispersed
Lcy1g1264 Lcy-Chr1:11957413 Lcy9g0404 Lcy-Chr9:11378610 7.28E-181 transposed
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1264 - - - 0.0