Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1276 ATGGAAATGCCTGGAAGGAGGTCAGATTACACGCTTTTAAGTCAAGTTCCGGACGAGGAGGTTGGAACGGGAGCTTCCACTTCGTTTTACGAGTCCTTAGCAGCTGACGGAAACATTAACAAGGGGAGAACCGATAGAGTCTATGATTGGGATGGGAGCGGTGATCACAAGATAAACACGCAAGCGAATCGGACAGGGAACATGTATTCGTGGATTGGTTTGCAGAGGCATTCTAGTGGAAGCAGCTACGATGACAGCTCTCTCTCCAGTGATTACTACGCACCTACGCTCTCAAACCCAGCAGCAAATGAGATCAATTCATTGGGATATATCCACGACGATGAATTAAGAATGAAAGCTGTGGGAAGTGGAGGTTCGTCGGGGAAGAGCTGGGCGCAGCAGACGGAAGAGAGCTATCAGTTGCAGCTGGCCTTGGCTCTCAGGCTTTCTTCGGAGGCCACATGTGCCGATGATCTCAACTTTATGGATCCGATGCCGGACGAGAGAGCGTTAAGATCGTTGTCGAGTTCAGCTGAGGCCATATCGCATCGATTTTGGGTAAATGGATGCATGTCCTATTTTGAGAAAGTGCCAGATGGCTTTTATCTAATTCATGGGATGGACCCTTATGTATGGTCTTTATGCACCAATCTACAAGAGGATGGCCGTATTCCATCATTTGAATCTCTGAAGACAGTTGATTCCAGCATTGGTTCATCGATTGAAGTAGTTTTGATAGATCAGCATAGTGATGCCAGTTTAAAGGAACTGCAAAACAGAGTGCATAATATTTCTTCTAGCTGTATAACGACAAAAGAGGTTGCAGATCATTTAGCAAAGCTGGTGTGCAATCACATGGGGGGTTCAGTTTCTGAGAGAGAAGATGACTTGGTTTCCTCCTGGAGGGAATGCAGCGACGACTTAAAAGAATGTTTGGGATCTATCGTGATTCCATTATGCAGCTTATCCGTTGGCCTTTGCAGACATCGTGCTCTTTTATTCAAAGTGCTAGCTGATTCAATTGATTTGCCCTGTCGAATTGCCAAGGGCTGTAAATATTGCACTAGAGATGATGCTTCATCTTGCCTTGTTAGGTTCGGGCTTGATAGGGAATATCTCATTGATCTGATTGGGAAGCCAGGTTGCTTATGCGAACCTGATTCTTTGCTCAATGGTCCATCATCCATCTCAATTTCTTCACCATTGCGATTTCCAAGACTAAAACCTATTGAATCTACCATTGATTTCAGGTCACTGGCCAAACAGTATTTCTTGGATAGTCAATCACTTAATATTGTATTTGATGAAGCTTCTTCAGGGAATGTTGTATCTGAGAAGGATGCCACATCCTCTGCCTATCAAAGACCATTCAATAGGAAGGATGTAGATGGTAAAAACATAGTGCTTACTGGTGACAGGGATAGAAGTTCTCAGTTATTGAATCCAAAAGCTTCTCAACCAAGTGCTCAAGATGGAAAGCCTGAGCAACTTAGATTATGTGATACTTCTCAATATAGTGTACAGTCTACCCCTTTTGTAGAACATGTAGTCCCATTTAACCAGATCTCACTAATTGGTTCCAAAGAGATTGAGCCTCTCTTAGCATTGTCACATCTAAGGATGGATCCTGCTAGCAATTTATCATTTATTGAGGGTAGTCAACTGGTTAAAAAACCAAATGAACTTTCCCTTGGCATAGAAGATTTGGTTATTCCTTGGAATGATCTTGTTTTGAGGGAGAAAATTGGGGCAGGTTCTTTTGGGACTGTATATCATGCTGATTGGCTTGGAACCGATGTTGCTGTGAAGGTTCTGATGGAACAAGACCTACATGCAGAACGTTTTGATGAATTTCTTAGGGAGGTTGCCATAATGAAATGTCTACGACATCCAAACATTGTTCTTCTTATGGGTGCAGTCACCGAGCCTCCAAATTTGTCCATTGTCACGGAATACTTATCAAGAGGTAGCTTGCACAGGCTTTTGCATAGACCTGGGGCAAGAGAGGTCTTAGATGAGAGACGCCGGTTAAACATGGCATATGATGTTGCAAAGGGAATGAATTATCTTCACAAGCGTAACCCTCCAATTGTTCATCGTGATTTGAAATCTCCAAATCTTTTGGTTGATAAGAAGTATACAGTAAAGGTTGGTGATTTTGGGCTTTCACGCTTAAAGGCACACACATTTCTTTCATCAAAATCCGCTGCTGGGACTCCTGAATGGATGGCACCAGAAGTTCTCCGTGATGAGCCATCAAATGAGAAATCAGATGTTTATAGCTTTGGTGTGATACTATGGGAGGTTGCTACATTGCAGCAACCATGGGGCAACTTGAACCCGGCGCAGGTTGTGGCAGCTGTAGGCTTTAAAGGCAAAAGACTTGAAATCCCACGCGATTTAAATCCTCGAGTTGCTACTATTATTGAGGCTTGCTTTGCCAGTGAGCCCTGGAAACGTCCATCCTTTTATGAAATAATGGAATCTTTGAAGCCATTGATCAAACCTTCTACGCCTCATCAAGTTCGCTCAAACACGTCGTTAGTTACTCAATGA 2556 43.31 MEMPGRRSDYTLLSQVPDEEVGTGASTSFYESLAADGNINKGRTDRVYDWDGSGDHKINTQANRTGNMYSWIGLQRHSSGSSYDDSSLSSDYYAPTLSNPAANEINSLGYIHDDELRMKAVGSGGSSGKSWAQQTEESYQLQLALALRLSSEATCADDLNFMDPMPDERALRSLSSSAEAISHRFWVNGCMSYFEKVPDGFYLIHGMDPYVWSLCTNLQEDGRIPSFESLKTVDSSIGSSIEVVLIDQHSDASLKELQNRVHNISSSCITTKEVADHLAKLVCNHMGGSVSEREDDLVSSWRECSDDLKECLGSIVIPLCSLSVGLCRHRALLFKVLADSIDLPCRIAKGCKYCTRDDASSCLVRFGLDREYLIDLIGKPGCLCEPDSLLNGPSSISISSPLRFPRLKPIESTIDFRSLAKQYFLDSQSLNIVFDEASSGNVVSEKDATSSAYQRPFNRKDVDGKNIVLTGDRDRSSQLLNPKASQPSAQDGKPEQLRLCDTSQYSVQSTPFVEHVVPFNQISLIGSKEIEPLLALSHLRMDPASNLSFIEGSQLVKKPNELSLGIEDLVIPWNDLVLREKIGAGSFGTVYHADWLGTDVAVKVLMEQDLHAERFDEFLREVAIMKCLRHPNIVLLMGAVTEPPNLSIVTEYLSRGSLHRLLHRPGAREVLDERRRLNMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKYTVKVGDFGLSRLKAHTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWEVATLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPRVATIIEACFASEPWKRPSFYEIMESLKPLIKPSTPHQVRSNTSLVTQ 851
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12109329 12119580 - Maker00013421 Lcy1g1276 623188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1276 851 FunFam Serine/threonine-protein kinase isoform 1 567 654 - -
Lcy1g1276 851 ProSiteProfiles Protein kinase domain profile. 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 Gene3D Transferase(Phosphotransferase) domain 1 655 844 - -
Lcy1g1276 851 SMART serkin_6 576 834 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 FunFam Serine/threonine-protein kinase CTR1 655 840 - -
Lcy1g1276 851 SUPERFAMILY Protein kinase-like (PK-like) 560 830 IPR011009 -
Lcy1g1276 851 Pfam Ethylene-responsive protein kinase Le-CTR1 178 384 - -
Lcy1g1276 851 Pfam Protein tyrosine and serine/threonine kinase 577 830 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 PRINTS Tyrosine kinase catalytic domain signature 691 709 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 PRINTS Tyrosine kinase catalytic domain signature 650 663 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 PRINTS Tyrosine kinase catalytic domain signature 757 779 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 PRINTS Tyrosine kinase catalytic domain signature 738 748 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 PRINTS Tyrosine kinase catalytic domain signature 801 823 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 PANTHER SERINE-THREONINE PROTEIN KINASE 135 832 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Lcy1g1276 851 ProSitePatterns Protein kinases ATP-binding region signature. 582 603 IPR017441 GO:0005524(InterPro)
Lcy1g1276 851 Gene3D Phosphorylase Kinase; domain 1 569 654 - -
Lcy1g1276 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 697 709 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lcy1g1276 851 MobiDBLite consensus disorder prediction 476 495 - -
Lcy1g1276 851 CDD STKc_MAP3K-like 582 830 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g0852 Lcy-Chr12:11767451 Lcy1g1276 Lcy-Chr1:12109329 4.80E-98 dispersed
Lcy1g1276 Lcy-Chr1:12109329 Lcy5g2386 Lcy-Chr5:46649161 2.14E-98 dispersed
Lcy9g1679 Lcy-Chr9:42015894 Lcy1g1276 Lcy-Chr1:12109329 5.49E-186 transposed
Lcy1g1276 Lcy-Chr1:12109329 Lcy5g0371 Lcy-Chr5:3734716 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
65661 None None None None Lcy PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1276 K14510 - csv:101208800 1491.09