Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lcy1g1301 | ATGTCTTCCACTCTCTGTTTTCCCTCCATCACTTTCCCCTCTACTTCCCTCCATAAGCGAATCCCTCTCAGGCGAACAACCCCACCTCCATATCTCTCCATTAAATCCTCCATTGACGAAAGGAATCCCTCTACGCCTGCCAAGCTCAAGAACTCAACCAACAATGCGAAATCCGGTTCCTGGGTTAGCCCAGATTGGCTCACTTCTCTGACTCGCTACATTACCCTACGGCAGGGCGACGATTCGGGCATTCCCATAGCCAGTGCGAAGCTCGATGACGTTTCTGATCTTCTCGGCGGTGCTCTCTTCCTTCCACTCTTCAAGTGGATGAATGACTATGGACCCATTTACAGGCTCGCCGCTGGCCCTAGGAATTTCGTTGTGGTTAGTGACCCCGCCATTGCTAAGCATGTTCTCAGAAATTATGGGACTTACGCTAAAGGGCTTGTTTCTGAGGTCTCCGAGTTCTTGTTTGGGTCGGGTTTTGCGATTGCAGAAGGCCCGCTTTGGACGGTTCGCCGTAGGGCTGTGGTTCCATCTCTTCACAAGAAGTATTTGTCAGTTATTGTTGATCGAGTATTCTGTAAATGTGCCATGAGATTGGTGGAGAAGCTGCAAAAGGATGCATTAAATAATAATTCAGTTAACATGGAGGAAAAGTTTTCTCAATTAACTCTTGATGTTATTGGTCTATCTGTATTCAACTACAGTTTTGATTCTCTCTCTACTGACAGCCCTGTGATTGATGCAGTTTACACTGCTTTGAAAGAGGCAGAGGCTCGTTCTACTGATATTTTACCATATTGGAAGGCAGCTGAAGAAGCAGTTACAGTGATCAGAAGAACTGTTGAAGAACTAATTGCCAAGTGCAAAGAGATTGTGGAAACTGAGGGTGAGCGTATTGATGAGGAGGAATATGTGAATGATGCTGATCCAAGCATCCTTCGTTTTCTGCTGGCCAGTAGACAAGAGGTCTCAAGTGTACAATTACGAGACGATCTATTGTCAATGTTAGTTGCTGGACATGAAACTACTGGTTCTGTTCTGACTTGGACACTGTATCTTTTAAGTAAGGACTCCTCATCATTGATCAAGGCACAAAATGAAGTTGATAGAGTCTTACAAGGAAGGCCTCCTTCCTATGAAGATACTAAGGAACTTAAATTTTTGACACGTTGTATTCTCGAGTCGATGCGCCTTTACCCACATCCACCTGTTTTGATAAGAAGAGCTCAAGTTGCTGACATACTGCCTGGAAATTACAAGGTTAATGCTGGTCAAGATATCATGATTTCAGTATATAACATCCACCGTTCTTCCCAGGTTTGGGAACAAGCAGAAGAGTTTATACCAGAAAGATTTGACTTGGAAGGTCCTGTGCCTAATGAAAGCAACACAGATTTCAGGTACACATTCTATTTGTGCGTGGAGCTACACTATGTTAAAAGTAGAATAGGCACTTACCAGGCACTCATAGACATGGTTAGTGCGAGTTGCTTGACCTCAAGCAAGTCATTCTCTTCAAGGCAAGTAGCCAATACACGTGCTAACATTGCTCGAATGGTGGCATTTGAATATCTAGGTGCAACAGACACTCTTACTTTGTCTGGCAGAAAACAGAAACCATCATTTCTTACCTTTTATAGAAGTAATATTTCTGATGCCCTCTCCCCACTCATCTTCAGATGA | 1689 | 43.87 | MSSTLCFPSITFPSTSLHKRIPLRRTTPPPYLSIKSSIDERNPSTPAKLKNSTNNAKSGSWVSPDWLTSLTRYITLRQGDDSGIPIASAKLDDVSDLLGGALFLPLFKWMNDYGPIYRLAAGPRNFVVVSDPAIAKHVLRNYGTYAKGLVSEVSEFLFGSGFAIAEGPLWTVRRRAVVPSLHKKYLSVIVDRVFCKCAMRLVEKLQKDALNNNSVNMEEKFSQLTLDVIGLSVFNYSFDSLSTDSPVIDAVYTALKEAEARSTDILPYWKAAEEAVTVIRRTVEELIAKCKEIVETEGERIDEEEYVNDADPSILRFLLASRQEVSSVQLRDDLLSMLVAGHETTGSVLTWTLYLLSKDSSSLIKAQNEVDRVLQGRPPSYEDTKELKFLTRCILESMRLYPHPPVLIRRAQVADILPGNYKVNAGQDIMISVYNIHRSSQVWEQAEEFIPERFDLEGPVPNESNTDFRYTFYLCVELHYVKSRIGTYQALIDMVSASCLTSSKSFSSRQVANTRANIARMVAFEYLGATDTLTLSGRKQKPSFLTFYRSNISDALSPLIFR | 562 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 1 | 12435542 | 12442977 | - | Maker00013022 | Lcy1g1301 | 623213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lcy1g1301 | 562 | PRINTS | E-class P450 group I signature | 110 | 129 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1301 | 562 | PRINTS | E-class P450 group I signature | 349 | 375 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1301 | 562 | PRINTS | E-class P450 group I signature | 329 | 346 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1301 | 562 | PRINTS | E-class P450 group I signature | 432 | 456 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1301 | 562 | MobiDBLite | consensus disorder prediction | 30 | 59 | - | - | |
| Lcy1g1301 | 562 | SUPERFAMILY | Cytochrome P450 | 99 | 457 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1301 | 562 | PANTHER | CYTOCHROME P450 FAMILY 4 | 101 | 464 | IPR050196 | GO:0009507(PANTHER)|GO:0009974(PANTHER)|GO:0016117(PANTHER) | |
| Lcy1g1301 | 562 | Pfam | Cytochrome P450 | 106 | 457 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1301 | 562 | Gene3D | Cytochrome P450 | 85 | 476 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lcy1g1301 | 562 | MobiDBLite | consensus disorder prediction | 22 | 59 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lcy1g1301 | Lcy-Chr1:12435542 | Lcy6g0733 | Lcy-Chr6:7122775 | 5.18E-43 | dispersed | |
| Lcy1g1301 | Lcy-Chr1:12435542 | Lcy6g1081 | Lcy-Chr6:12030175 | 3.78E-114 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lcy1g1301 | K09837 | - | csv:101204961 | 858.596 |