Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1311 ATGACCATGCCATCATTGCCATTATTGCGAGGCCTGTGGGCGTCTCTGCTGATCGTGTCGTTGCTCATTGGCTATGGAAATGCAGCAGCAGCCTCGTTGGGACGTCGGCGTTATGTGATGCGCAGGCAATTAGGCGCGCAGTTTATTAGAAAGAATCACAGGCCGTCGTTTAAGCCCGGCCCTTGGAAGCACGCTCATGCAACCTTCTATGAAGGTGGCTCCAACACGTTTGGAGGTGCATGTGGGTACGACGACGTAGAAAAGGAAGGGTATGGGATGCAGACGGCGGCGCTGAGCCTGGCGCTGTTCAACAACGGCCAGAGCTGCGGCGCTTGCTTCGAAATCAAATGCGTCGACGATCCTCAGTCTCAGATGTGCAAGCCCGGGCAGCCCTCCCTCATTGTTACGGGCACCAACCACTGCCCGCCCAACTACAACCTCGCCAGCGACAATGGCGGATGGTGCAATCCCCCGCTCGAGCATTTCGACATAGCCAAGCCTGTTTTCCTCAACATTGCAGAGTACAAGGCTGGCATCGTTCCCATCACTTACCGCAGGGTTCCATGCCAAAAGCAAGGAGGAATTCGATTCACAATAACAGGAAATCCATACTTCAACCAAGTGTTGGTGTGGAACGTGGGAGGAGCTGGAGATTTGACGAGTGTGCTAGTGAAGGGTCACCGCAAGCTCAAATGGACGGCCATGTCTCGTTTGTGGGGTCAAAAATGGGTCACCAACGCCATGATGGCTGGCGAGTCGCTCACCTTCAGGGTTCGAGCCAGCGATGGCAGATTCTCCACTTCATGGTACATTGCTCCACCCAATTGGCAGTTTGGTCAGACCTTCGAAGGCAAAAACTTTAAGTAG 867 54.09 MTMPSLPLLRGLWASLLIVSLLIGYGNAAAASLGRRRYVMRRQLGAQFIRKNHRPSFKPGPWKHAHATFYEGGSNTFGGACGYDDVEKEGYGMQTAALSLALFNNGQSCGACFEIKCVDDPQSQMCKPGQPSLIVTGTNHCPPNYNLASDNGGWCNPPLEHFDIAKPVFLNIAEYKAGIVPITYRRVPCQKQGGIRFTITGNPYFNQVLVWNVGGAGDLTSVLVKGHRKLKWTAMSRLWGQKWVTNAMMAGESLTFRVRASDGRFSTSWYIAPPNWQFGQTFEGKNFK 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12580749 12583442 - Maker00013380 Lcy1g1311 623223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1311 288 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 204 284 IPR007117 -
Lcy1g1311 288 Pfam Expansin C-terminal domain 195 273 IPR007117 -
Lcy1g1311 288 PANTHER EXPANSIN-A15 47 287 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 205 226 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 152 169 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 193 205 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 90 104 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 133 143 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 241 262 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 270 286 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 PRINTS Expansin signature 169 182 IPR002963 GO:0009664(InterPro)
Lcy1g1311 288 SUPERFAMILY PHL pollen allergen 191 284 IPR036749 -
Lcy1g1311 288 Gene3D - 192 287 IPR036749 -
Lcy1g1311 288 Gene3D - 47 190 IPR036908 -
Lcy1g1311 288 SUPERFAMILY Barwin-like endoglucanases 56 212 IPR036908 -
Lcy1g1311 288 CDD DPBB_EXPA_N 61 189 - -
Lcy1g1311 288 PRINTS Expansin/Lol pI family signature 61 76 IPR007118 GO:0005576(InterPro)
Lcy1g1311 288 PRINTS Expansin/Lol pI family signature 232 246 IPR007118 GO:0005576(InterPro)
Lcy1g1311 288 PRINTS Expansin/Lol pI family signature 270 284 IPR007118 GO:0005576(InterPro)
Lcy1g1311 288 PRINTS Expansin/Lol pI family signature 177 193 IPR007118 GO:0005576(InterPro)
Lcy1g1311 288 PRINTS Expansin/Lol pI family signature 99 117 IPR007118 GO:0005576(InterPro)
Lcy1g1311 288 SMART dpbb_1 95 184 IPR007112 -
Lcy1g1311 288 Pfam Lytic transglycolase 95 184 IPR009009 -
Lcy1g1311 288 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 78 194 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1311 Lcy-Chr1:12580749 Lcy8g1801 Lcy-Chr8:44424220 1.32E-110 dispersed
Lcy1g1311 Lcy-Chr1:12580749 Lcy1g1434 Lcy-Chr1:13900248 6.81E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1311 - - - 0.0