Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1316 ATGCCGATCCGTAACATTGCCATTGGAAGGCCCGAAGAGGCTACCCATCCGGATGCTTTGAAGGCTGGGTTGGCTGAGTTCATTTCCACCTTGATTTTCGTTTTTGCCGGCCAAGGTTCCGGCATAGCCTTCAGTAAGCTTACTGACGGCGGCGCCGCCACTCCCGCCGGCCTTATCTCCGCCTCCATCGCCCATGCCTTCGCCCTTTTTGTTGCCGTCTCCGTTGGCGCCAACATCTCCGGCGGCCACGTCAACCCTGCCGTTACCTTCGGCGCCTTCGTCGGTGGCAACATCACCCTCCTCCGTGGCATCGTCTACTGGATCGCTCAGCTCCTCGGATCCGTTGTCGCCTGCTTGCTCCTTAAGTTCGTCACTGGCTTGCCCACCGGAAGCTTCGCTCTATCAGCGGGAGTTGGTGAAATAAACGCCTTCGTTTTCGAGATCGTGATGACGTTCGGATTGGTGTACACGGTGTACGCGACCGCAGTGGATCCGAAGAAGGGCAGTTTGGGAACAATTGCACCGATCGCCATCGGTTTCATCGTCGGAGCTAACATTTTGGCCGGCGGAGCATTCACCGGAGCGTCGATGAACCCGGCTGTGGCATTTGGACCGTCGGTGGTGAGCTGGTCATGGGACAGCCACTGGGTGTACTGGGCCGGGCCTCTGATCGGAGGTGGGCTTGCTGGGCTCATCTACGAGTTCGTCTTCATTTCCAACACCCACGAGCAGCTGCCAACCACCGACTACTGA 753 58.43 MPIRNIAIGRPEEATHPDALKAGLAEFISTLIFVFAGQGSGIAFSKLTDGGAATPAGLISASIAHAFALFVAVSVGANISGGHVNPAVTFGAFVGGNITLLRGIVYWIAQLLGSVVACLLLKFVTGLPTGSFALSAGVGEINAFVFEIVMTFGLVYTVYATAVDPKKGSLGTIAPIAIGFIVGANILAGGAFTGASMNPAVAFGPSVVSWSWDSHWVYWAGPLIGGGLAGLIYEFVFISNTHEQLPTTDY 250
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12646879 12648633 + Maker00013524 Lcy1g1316 623228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1316 250 Gene3D Glycerol uptake facilitator protein. 4 250 IPR023271 -
Lcy1g1316 250 SUPERFAMILY Aquaporin-like 13 246 IPR023271 -
Lcy1g1316 250 CDD MIP 21 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 Pfam Major intrinsic protein 14 233 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 FunFam Probable aquaporin TIP1-1 4 250 - -
Lcy1g1316 250 PRINTS Major intrinsic protein family signature 146 164 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 PRINTS Major intrinsic protein family signature 102 121 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 PRINTS Major intrinsic protein family signature 65 89 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 PRINTS Major intrinsic protein family signature 216 236 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 PRINTS Major intrinsic protein family signature 179 201 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 PRINTS Major intrinsic protein family signature 21 40 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1316 250 ProSitePatterns MIP family signature. 83 91 IPR022357 -
Lcy1g1316 250 PANTHER AQUAPORIN-8 5 246 IPR034294 GO:0006833(PANTHER)|GO:0009705(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy12g1837 Lcy-Chr12:39486350 Lcy1g1316 Lcy-Chr1:12646879 1.47E-100 dispersed
Lcy13g1413 Lcy-Chr13:32482233 Lcy1g1316 Lcy-Chr1:12646879 3.90E-75 dispersed
Lcy1g1316 Lcy-Chr1:12646879 Lcy3g2133 Lcy-Chr3:48287893 8.62E-97 dispersed
Lcy10g1817 Lcy-Chr10:42496317 Lcy1g1316 Lcy-Chr1:12646879 4.26E-122 transposed
Lcy5g2326 Lcy-Chr5:46134097 Lcy1g1316 Lcy-Chr1:12646879 3.52E-103 transposed
Lcy1g1316 Lcy-Chr1:12646879 Lcy5g0321 Lcy-Chr5:3082269 9.66E-130 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1316 K09873 - csv:101204225 468.774