Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1322 ATGAGAGGCGCAAGATTCAGAACTGGGCGAAGACTGATGAGGAATTTCGCCTTACAAGTTCTACTGGGCCGATGGTTCACCGTCTTCGCTTCTTTACTGATCATGTCCGTTTCCGGCGCCACCTACATGTTCGCACTCTACTCCGCCGACATCAAATCCTCCTTGAATTACGACCAGACCACTCTCAACCTCATCGGCTTCTTCAAGGATCTCGGTGCCAACGTCGGAATCCTCTCCGGCCTCATCAATGAAATCACGCCGCCTTGGGTCGTCCTCTTCATCGGCGGGGTAATGAATTTCTTTGGCTATTTCATGATTTGGCTCTCTGTCACTCACCGAATCCACAAACCCAATGTGCCCGCAATGTGTTTGTATATATTCCTAGGTGCCAATTCTCAGACCTATGCCAATACAGGGGCTTTGATTCCTTCTGTGAAGAATTTTCCCGAGAATCGAGGTAATGTTTTGGGGTTGTTGAAAGGGTTTGTTGGTTTAAGTGGGGCAATTTTGACTCAGCTTTACCATGCTTTTTATGGGGATGATTCTAAGGATTTTATCTTGCTTATTGCTTGGCTGCCAACTGCGGTTTCTTTCCTGCTTCTTCGGATTGTTAGAGTAGTGGAAGTAAATGGAATATCCAAGTCTAATGATCTCAAAAATTTCTATCACATGCTTTACATTTCCCTTGGTCTTGCTGGCTTTCTTATGGTTTTGATTATTATTCAAAACGAGCTCATGTTTACTAGAATTCAGTATCTGGGTTGTGCGTTTATTCTGCTGGCGCTTCTTTTTCTTCCCCTTGTCGTTGTTATAAGAGAAGAATTCTGCATTAGGAAGAGAAAGTTGCAAGCTGTGGATGCAACTTCTTGGCATCCACTAGACCCATCTCCAGCTGAATTACTGTCGTCTAGACCACCAAGTTCGACCACGACTGCCATAGCTGTAGCCATCCCAAGTTCTTGCTTTAAAAATGTGTTCAGACCACCGGAAAGAGGAGAGGACTACACCATTTTACAAGCAATCTTTAGCATAGATATGTTGATTCTGTTTGTTGCTACAATTTGTGGGGCTGGTGGAACTTTGACTGCAATGGACAACTTGAGTCAGATAGGCAGCTCCCTTGGCTATTCAACTCATAGCATTTCTACTTTCACTTCTCTCGTGAGTATATGGGGTTTTCTTGGTCGAGCATTTGCGGGTTATGCTTCTGAATTCTTATGGACAAAGTATAACTTCTCTCGCCCTTTGTTCCTCACTCTTGTGCTACTTTTCTCTTGTGTTGGTCATCTGCTCATTGCCTTTGGAGTCCCAACCTCCCTTTACTTTGCTTCATTGATCATTGGATTTTGCTTTGGAGCACAATGGCCATTGATTTTCGCCATTGTATCTGAATTATTTGGCTTGAAGTACTATGCAACTTTGTATAGCATAAGTGGAATTGCTAGCCCAGTTGGCTCATACATTTTCAATGTGAAAGTGGCTGGCAATTTATACGACCAAGAGGCTAAAAAGCAAATGGCAGCCATTGGTCTTAAAAGTGTAGCTGGTAGAGACTTAACCTGCAAGGGTGTCCAATGTTACAGATTAGCTTTTCTCATAATAACTGCTGCAACTGTGTTCGGCTGTGCCGTTTCATTCATTTTGGTGCTTAGAACTTGGGAATTCTATAAGGGTGATATCTATAAGAAGTTTAGAGAGGAAAGAAAGGAAGCAGAATGA 1719 43.16 MRGARFRTGRRLMRNFALQVLLGRWFTVFASLLIMSVSGATYMFALYSADIKSSLNYDQTTLNLIGFFKDLGANVGILSGLINEITPPWVVLFIGGVMNFFGYFMIWLSVTHRIHKPNVPAMCLYIFLGANSQTYANTGALIPSVKNFPENRGNVLGLLKGFVGLSGAILTQLYHAFYGDDSKDFILLIAWLPTAVSFLLLRIVRVVEVNGISKSNDLKNFYHMLYISLGLAGFLMVLIIIQNELMFTRIQYLGCAFILLALLFLPLVVVIREEFCIRKRKLQAVDATSWHPLDPSPAELLSSRPPSSTTTAIAVAIPSSCFKNVFRPPERGEDYTILQAIFSIDMLILFVATICGAGGTLTAMDNLSQIGSSLGYSTHSISTFTSLVSIWGFLGRAFAGYASEFLWTKYNFSRPLFLTLVLLFSCVGHLLIAFGVPTSLYFASLIIGFCFGAQWPLIFAIVSELFGLKYYATLYSISGIASPVGSYIFNVKVAGNLYDQEAKKQMAAIGLKSVAGRDLTCKGVQCYRLAFLIITAATVFGCAVSFILVLRTWEFYKGDIYKKFREERKEAE 572
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12759877 12761595 + Maker00013480 Lcy1g1322 623234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1322 572 CDD MFS_Mch1p_like 23 542 - -
Lcy1g1322 572 Gene3D MFS general substrate transporter like domains 339 555 IPR036259 -
Lcy1g1322 572 SUPERFAMILY MFS general substrate transporter 25 556 IPR036259 -
Lcy1g1322 572 Pfam Nodulin-like 24 271 IPR010658 -
Lcy1g1322 572 PANTHER UNCHARACTERIZED NODULIN-LIKE PROTEIN 23 565 - GO:0016020(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0341 Lcy-Chr11:5759399 Lcy1g1322 Lcy-Chr1:12759877 6.28E-11 dispersed
Lcy1g1322 Lcy-Chr1:12759877 Lcy7g0626 Lcy-Chr7:5718486 5.91E-238 dispersed
Lcy1g1322 Lcy-Chr1:12759877 Lcy5g0317 Lcy-Chr5:3031968 6.48E-261 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1322 - - - 0.0