Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1324 ATGCTGGCCACAGCCTGCATTGTGCTTCTAGCTTTGTTGCTACCCTCTGTCCCGCTGCACGGTGCCGCTGCCGCACTCAATCACACTCTCCCCGGCCAGCATCCGAGCCCGGAACTGGTTGCACAAGAAGTTCACAGGAAAGTGAATGCTTCCATAACGAGAAGGCAATTGCTCCAACTCTCAGAGAAAGACGAATCTTCTTCCTGCTACACCGGGAACCCCATCGACGACTGCTGGAAATGCGATCCAAATTGGCCAAACAACCGCCAACGCCTCGCCGATTGCGCCATAGGATTTGGCCAGTACGCTCTCGGCGGCAAGAACGGCGAGTTCTACATAGTGACAGACGACTCCGATGACGATCCGGTCAATCCAAAGCCCGGAACATTACGATACGCCGTGATACAGCCGCAACCTCTCTGGATCGTCTTCCCCGCCAACATGCTCATCAAACTCTCACAGGAGCTCATCTTCAACAGCTACAAAACCCTAGACGGCCGCGGCGCCAACGTCCACATCGTCGGAGGCGGCTGCATCACCTTGCAGTACATAAGCAACGTCATCATCCACAACATCCACATCCACCATTGCTATCCATCAGGTAACACGATGGTCCGATCGAGTCCGACGCATTACGGTTACCGGACGAAATCGGACGGCGACGGGATATCGATCTTCGGGTCGAAGGACATATGGATTGACCATTGTTCGCTGTCGCATTGCAAAGATGGGCTGATTGATGCGGTGATGGGCTCCACCGGAATCACGATTTCAAACAATTATTTCTCGCATCACGATGAGGTTATGCTGCTGGGTCACAGTGACACCTACTTGCCGGACTCCGGAATGCAGGTAACCATAGCATTCAACCACTTCGGGGAGAAGCTAGTGCAAAGGATGCCGCGATGCCGACGTGGCTACATCCACGTGGTCAACAACGACTTCACCCAATGGGAGATGTACGCAATCGGCGGCAGCGGAAACCCCACAATCAACAGCCAAGGCAACCGCTACACCGCGCCATACGACCGCAACGCCAAGGAGGTAACCAAGCGGGTCGAGACCGCCGAGTCCGAGTGGCGCGGCTGGAACTGGCGCTCCGACGGCGACATCCTCGTCAACGGCGCCTTCTTTGTCACTTCCGGCCAAGGCCTCGAAGTCAAGTACGAGAAGGCCTACAGCGTCGAGCCCAAGTCCGCCGCGCTGATCGACCAGCTCACTTGGCACGCCGGCCCGCTCGGCGTCGGCGGTAGGGACAACAATTTGGGGATGTGGACCACTGGCCCTAATGGCGGAGGCTTTGCGATTGGGTCTGGCCCGGATTACACTGACGACATGTCGGAAAGCTGGTCGAGGTCTCGTTATTTTGTTATGGCGTTCTCGCTTTTGTTTTGTTCTTTTTGTGCATTGGCACTTGTCTTTGTTAGTTCTTAG 1434 55.65 MLATACIVLLALLLPSVPLHGAAAALNHTLPGQHPSPELVAQEVHRKVNASITRRQLLQLSEKDESSSCYTGNPIDDCWKCDPNWPNNRQRLADCAIGFGQYALGGKNGEFYIVTDDSDDDPVNPKPGTLRYAVIQPQPLWIVFPANMLIKLSQELIFNSYKTLDGRGANVHIVGGGCITLQYISNVIIHNIHIHHCYPSGNTMVRSSPTHYGYRTKSDGDGISIFGSKDIWIDHCSLSHCKDGLIDAVMGSTGITISNNYFSHHDEVMLLGHSDTYLPDSGMQVTIAFNHFGEKLVQRMPRCRRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPYDRNAKEVTKRVETAESEWRGWNWRSDGDILVNGAFFVTSGQGLEVKYEKAYSVEPKSAALIDQLTWHAGPLGVGGRDNNLGMWTTGPNGGGFAIGSGPDYTDDMSESWSRSRYFVMAFSLLFCSFCALALVFVSS 477
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12771791 12776528 - Maker00013554 Lcy1g1324 623236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1324 477 Gene3D - 72 414 IPR012334 -
Lcy1g1324 477 SMART amb_all 147 344 IPR002022 -
Lcy1g1324 477 PANTHER PECTATE LYASE 18-RELATED 14 415 IPR045032 GO:0030570(InterPro)
Lcy1g1324 477 FunFam Pectate lyase 72 414 - -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 119 144 IPR018082 -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 95 112 IPR018082 -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 299 318 IPR018082 -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 155 171 IPR018082 -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 219 240 IPR018082 -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 363 387 IPR018082 -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 321 340 IPR018082 -
Lcy1g1324 477 PRINTS Pollen allergen Amb family signature 392 415 IPR018082 -
Lcy1g1324 477 Pfam Pectate lyase 157 336 IPR002022 -
Lcy1g1324 477 SUPERFAMILY Pectin lyase-like 68 397 IPR011050 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1324 Lcy-Chr1:12771791 Lcy7g0622 Lcy-Chr7:5671541 2.65E-224 dispersed
Lcy1g1324 Lcy-Chr1:12771791 Lcy10g1725 Lcy-Chr10:41619642 2.36E-220 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1324 K01728 - csv:101203012 890.952