Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1338 ATGGGAGGAAAGTGCCCTCACAGAAGCGTCAAGAAGCGGAGATACTCGCACAAGACCGCTCGCCGCACGAAATTTCTCGTCAAAGGCGATGATATGGTCTACGATGAGTTGAAGAAACCCGACGTGGAGAGGCCTTCTCTACCTGTTGACGAAGACTTGCCTGGAATGGGGCAGTACTACTGCTTGCACTGCGACCGATACTTTGCGAATGTATCTGTGAGGGACGAGCATTTCAAGACCAAGCGTCACAGGAAGCGGGTAAAACTAATGACGGGTCCTGCACCGCACACGCAACTGGACGCCGAGTTAGCTGCTGGGATGGGCATGCCTGATAATGGTCCAAAGCTTATGGCAATGTGA 360 52.78 MGGKCPHRSVKKRRYSHKTARRTKFLVKGDDMVYDELKKPDVERPSLPVDEDLPGMGQYYCLHCDRYFANVSVRDEHFKTKRHRKRVKLMTGPAPHTQLDAELAAGMGMPDNGPKLMAM 119
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 12954943 12956754 - Maker00012567 Lcy1g1338 623250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1338 119 Gene3D Classic Zinc Finger 45 109 - -
Lcy1g1338 119 FunFam Zinc finger protein 593 45 109 - -
Lcy1g1338 119 Pfam Zinc-finger double-stranded RNA-binding 58 84 IPR022755 -
Lcy1g1338 119 SUPERFAMILY beta-beta-alpha zinc fingers 47 110 IPR036236 -
Lcy1g1338 119 ProSitePatterns Zinc finger C2H2 type domain signature. 61 83 IPR013087 -
Lcy1g1338 119 PANTHER EXPRESSED PROTEIN 1 119 - -
Lcy1g1338 119 SMART ZnF_U1_5 56 90 IPR003604 GO:0003676(InterPro)|GO:0008270(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1338 K14821 - csv:101222807 244.202