Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1355 ATGGCCCAAGTTGAGACCATCTGTAAGAGCTCTACTCATGACCTACTCAATTGGAGTGTGGCAGCTGAGTCCCTTAAGGGAAGCCATTTTGATGAGGTGAAACGTATGGTGGAGGAGTATAAGAGGCCCCATGTCAAGCTTAGTGGTGAGACCCTCACCATTTCTCAAGTGGCTGCCATTGCTAATCGAAACTCTGATGTTACTATTGAACTTTGTGAGTCTACTAGGGCTGGTGTGAAAGCTAGTAGTGATTGGATTATGGACAGTATAAACAAAGGCACTGATAGCTATGGTGTTACTACCGGATTCGGTGCTACATCCCATAGAAGAACCAACCAAGGTGGGGCTCTTCAAAAGGAGCTGATTCGATTCTTAAATGCTGGGATCTTTGGGAGTGGAGCTGAGTCGAGCCATACTTTGCCTCACTCGGCTACAAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTGTTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATTGCTGGATTGCTCATTGGCCGACCAAACTCTAAAGCTATTGGTCCAAATGGAGAATGTCTAGATGCAAAGGAGGCTTTCCAACAAGCCCACATTCCTTATGGGTTCTTTGAGTTGCAACCTAAGGAAGGTTTTGCTCTTGTCAACAGTACTGCTGTTGGTTCTGGGTTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTGGTTGTTTTGTCAGAAATTCTTTCGGCCATTTTTGCTGAGGTCATGCAAGGGAAGCCTGAATTCACTGATCATTTGACTCATAAGTTGAAGCATCATCCTGGTCAAATTGAGGCGGCTGCAATCATGGAATACATTTTGGATGGAAGTTCTTACATGAAAACTGCTAAGAAATTGCATGAAACTGATCCTCTTCAAAAGCCCAAGCAAGATCGTTATGCTCTGAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAGGTTATTCGATTCTCAACAAAGTCTATTGAGCGGGAGATTAATTCCGTCAACGACAACCCTTTGATTGATGTTTCAAGAAATAAGACTTTGCATGGAGGAAACTTCCAAGGAACTCCGGTCGGAGTCTCCATGGATAACACTCGTTTGGCTATTGCTTCAATTGGGAAGCTTATGTTTGCTCAATTCTCAGAACTTGTCAATGATTTCTACAATAATGGTTTACCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAACTTCAATATCTTGCCAATCCAGTGACAAGTCATGTTCAGAGTGCTGAGCAACATAACCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGATATTTTGAAACTCATGTCTTCAACATTTTTAGTGGCTCTTTGCCAAGCAATTGACTTGAGACATTTAGAGGAAAATTTGAAGAGCACAGTTAAAAGCATTGTAGGCAAAGTAGCAAAGAAAGTGTTGTCCACATCATCTAATGGTTCACTTTACCCGTCACGATTTTGTGAAAATGACTTATTGAAAGTTGTTGACGGAGAGTACACTTTTGCTTACATAGATGACCCATGCAGTGCCACATACCCGTTAATGCAGAAGTTGAGGCAAGTTCTCGTTGAGCATGCCATCACAAATAGTGATGATGAAAAGAACACAAACACTTTAGTCTTCCAAAAGATTGTTGCTTTCGAGGAGGAATTGAAGGCAATTTTACCAAAGGAAGTTGAAAGTACAAGGTTGACATACGAGAGTGGAAATGCACAAATTAAGAACCAAATTGAAGAATGCAGATCTTACCCATTATATAAATTTGTGAGAGAAGAGTTAGGAACAAAATTGCTCACAGGTGAGAAAGTGATATCTCCAGGAGAAGCGTGTGAAAAAGTATTTATGGCTTTGTGTCAAGGAAAGATGATCGATTCTATCTTAGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATATGTTAG 2118 41.17 MAQVETICKSSTHDLLNWSVAAESLKGSHFDEVKRMVEEYKRPHVKLSGETLTISQVAAIANRNSDVTIELCESTRAGVKASSDWIMDSINKGTDSYGVTTGFGATSHRRTNQGGALQKELIRFLNAGIFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGVRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLIGRPNSKAIGPNGECLDAKEAFQQAHIPYGFFELQPKEGFALVNSTAVGSGLASIVLFEANILVVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEYILDGSSYMKTAKKLHETDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKTLHGGNFQGTPVGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVGKVAKKVLSTSSNGSLYPSRFCENDLLKVVDGEYTFAYIDDPCSATYPLMQKLRQVLVEHAITNSDDEKNTNTLVFQKIVAFEEELKAILPKEVESTRLTYESGNAQIKNQIEECRSYPLYKFVREELGTKLLTGEKVISPGEACEKVFMALCQGKMIDSILECLKEWNGAPIPIC 705
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13124488 13126605 + Maker00013171 Lcy1g1355 623267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1355 705 NCBIfam phenylalanine ammonia-lyase 16 695 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy1g1355 705 Gene3D - 5 251 IPR024083 -
Lcy1g1355 705 Gene3D - 518 639 IPR023144 -
Lcy1g1355 705 PANTHER HISTIDINE AMMONIA-LYASE 9 705 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1355 705 FunFam Phenylalanine ammonia-lyase 252 542 - -
Lcy1g1355 705 Pfam Aromatic amino acid lyase 52 527 IPR001106 -
Lcy1g1355 705 CDD PAL-HAL 50 515 IPR001106 -
Lcy1g1355 705 Gene3D Fumarase/aspartase (Central domain) 252 700 - -
Lcy1g1355 705 SUPERFAMILY L-aspartase-like 14 705 IPR008948 GO:0003824(InterPro)
Lcy1g1355 705 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 187 203 IPR022313 GO:0016841(InterPro)
Lcy1g1355 705 FunFam Phenylalanine ammonia-lyase 518 639 - -
Lcy1g1355 705 FunFam Phenylalanine ammonia-lyase 6 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1355 Lcy-Chr1:13124488 Lcy1g1359 Lcy-Chr1:13145330 0 dispersed
Lcy1g1355 Lcy-Chr1:13124488 Lcy1g1356 Lcy-Chr1:13128327 0 tandem
Lcy2g0946 Lcy-Chr2:8793689 Lcy1g1355 Lcy-Chr1:13124488 8.86E-284 transposed
Lcy1g1355 Lcy-Chr1:13124488 Lcy10g1753 Lcy-Chr10:41917143 3.74E-283 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1355 K10775 - csv:101218856 1255.74