Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1356 ATGGCGTCCACTCAGTTTGAACAAATTGCTCACCAGAATGGCTCGGTGGAGAGCTTTTGCACGACCCGGCCTACTGATCCACTCAATTGGGGTGTGGCGGCTGAGTCCTTGAAGGGGACCCATCTCGATGAGGTGAAGCGTATGGTGGAGGAGTATAGACGGCCTGTGGTGAAGTTGGGAGGTGAGACTCTCACGATTTCCCAAGTGGCTGCCATTGCCACTCGAGATAACGATGTGATGGTGGAATTGGCTGAGTCTGCTAGAGCGGGTGTTAAAGCTAGTAGTGATTGGGTGATGGAGAGTATGAACAAAGGGACCGATAGTTATGGTGTTACTACTGGCTTTGGTGCTACGTCGCATAGAAGAACCAAACAAGGTGGGGCTCTTCAAAAGGAGTTGATTCGATTCTTGAATGCTGGGATCTTTGGAAATGGGGCTGAGTCGAATCACACTCTGCCTCATTCGGCGACGAGGGCAGCCATGTTGGTGAGGATCAATACTCTGCTCCAAGGCTATTCGGGTATTAGATTTGAGATTTTGGAAGCTATTACTAATCTTCTCAATCACAACATTACTCCGTGTTTGCCACTGCGTGGAACAATTACGGCATCTGGGGACCTTGTCCCTTTGTCGTATATTGCTGGACTACTTACGGGTCGTCATAATTCAAAGGCGATTGGGCCCAATGGTGAAATTCTTGATGCAGAAACTGCTTTTAAGCAAGCTAGTATTCCATCTGGTTTCTTTGAGTTGCAACCTAAAGAAGGTCTTGCTCTTGTCAATGGTACTGCTGTTGGTTCTGGCTTGGCTTCTATTGTTCTCTTTGAAGCAAATATTTTAGCTGTTTTGTCAGAGATTCTTTCTGCCATTTTTGCTGAGGTCATGCAAGGAAAACCTGAGTTCATTGATCATTTGACTCACAAGTTGAAGCATCACCCTGGCCAAATTGAAGCAGCAGCAATTATGGAGCACATTTTAGAAGGAAGCTCTTACATGAAAGCAGCTAAGAAATTGCATGAAATTGATCCACTCCAAAAGCCAAAACAAGATCGTTATGCTCTTCGAACTTCACCTCAATGGCTTGGTCCCTTGATTGAAGTAATTCGATACTCCACCAAGTCTATCGAGCGAGAGATTAATTCAGTCAACGACAACCCATTGATTGATGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCTATGGACAACACTCGGTTGGCAATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAACGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAATCCAAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTCCAGAGTGCTGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCTGAAGCCATTGACATTTTGAAACTCATGTCGTCCACATTTTTGGTTGCACTATGTCAAGCAATTGACTTGAGGCACTTGGAAGAAAACTTGAAGAGCACAGTTAAAAGCATTGTAAGCCAAGTAGCCAAGAAAGTGTTGACCACATCCTCCAATGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTAATCAAAGTCGTTGACAGAGAATATACATTTGCCTACATTGACGATCCATGCAGTGCTACTTACCCATTGATGCAGAAATTGAGACAAGTTCTTGTTGAACATGCACTCACCAATGGCGAAAATGAAAAGAACACAAACACTTCCATCTTCCAGAAGATTAGTGCTTTTGAAGAGGAATTAAAAGCAATTTTACCAAAGGAAGTTGAAAATGCAAGGTTGGCATATGAGAGCGGAAATTCTAAGATTGAAAATCAGATTAAGGATTGCAGATCTTATCCATTATATAGATTTGTGAGAGAAGAGTTGGGAACAAAATTGTTGACGGGAGAAAGGGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTATTCACAGCTTTATGTCAAGGAAAGATGATTGACTCTATCCTAGAGTGCTTGAACGAATGGAATGGTGCTCCAATTCCTATTTGTTAA 2154 42.76 MASTQFEQIAHQNGSVESFCTTRPTDPLNWGVAAESLKGTHLDEVKRMVEEYRRPVVKLGGETLTISQVAAIATRDNDVMVELAESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGNGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITNLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRHNSKAIGPNGEILDAETAFKQASIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFIDHLTHKLKHHPGQIEAAAIMEHILEGSSYMKAAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRYSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSIVSQVAKKVLTTSSNGALHPSRFCEKDLIKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALTNGENEKNTNTSIFQKISAFEEELKAILPKEVENARLAYESGNSKIENQIKDCRSYPLYRFVREELGTKLLTGERVISPGEECEKVFTALCQGKMIDSILECLNEWNGAPIPIC 717
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13128327 13130480 + Maker00012681 Lcy1g1356 623268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1356 717 CDD PAL-HAL 62 527 IPR001106 -
Lcy1g1356 717 Gene3D - 530 651 IPR023144 -
Lcy1g1356 717 PANTHER HISTIDINE AMMONIA-LYASE 22 717 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1356 717 SUPERFAMILY L-aspartase-like 26 717 IPR008948 GO:0003824(InterPro)
Lcy1g1356 717 FunFam Phenylalanine ammonia-lyase 530 651 - -
Lcy1g1356 717 Gene3D - 18 263 IPR024083 -
Lcy1g1356 717 FunFam Phenylalanine ammonia-lyase 264 573 - -
Lcy1g1356 717 FunFam Phenylalanine ammonia-lyase 18 263 - -
Lcy1g1356 717 NCBIfam phenylalanine ammonia-lyase 26 707 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy1g1356 717 Pfam Aromatic amino acid lyase 64 543 IPR001106 -
Lcy1g1356 717 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 199 215 IPR022313 GO:0016841(InterPro)
Lcy1g1356 717 Gene3D Fumarase/aspartase (Central domain) 264 712 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy11g0969 Lcy-Chr11:29375537 Lcy1g1356 Lcy-Chr1:13128327 0 dispersed
Lcy1g1356 Lcy-Chr1:13128327 Lcy1g1359 Lcy-Chr1:13145330 0 dispersed
Lcy1g1355 Lcy-Chr1:13124488 Lcy1g1356 Lcy-Chr1:13128327 0 tandem
Lcy1g1356 Lcy-Chr1:13128327 Lcy1g1357 Lcy-Chr1:13134977 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1356 K10775 - csv:101222092 1342.02