Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1357 ATGGCACCTGCTCACTTCCAACAACTTGCCTGCCAGAATGGTTCCATTGAGAGCTTCTGCATCAGCCAAAATGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTAGAGGAGTACCGGAGGCCACTCGTCAAGCTTGGAGGTGAGACCCTCACCATTTCCCAGGTGGCTGCCATTGCTACAAGAGACTCTGATGTTACTGTTGAGCTTTCTGAGTCTGCAAGAGCTGGTGTTAAAGCTAGTAGCGATTGGGTTATGGAGAGCATGAACAAAGGCACTGATAGCTATGGTGTTACTACTGGATTTGGTGCTACGTCCCATAGAAGGACCAAACAGGGTGGGGCTCTTCAAAAGGAGCTCATTCGATTCTTGAATGCTGGAATTTTTGGGAGCGGGACTGAGTCGAATCATACTTTGCCTCACTCGGCTACGAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCTTGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTATATTGTCGGATTGCTCACTGGCCGACCAAACTCTAAGGCCATCGGACCGAATGGAGAAAGTATTGATGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCTCTTGTTAATGGCACCGCCGTTGGTTCGGGATTGGCTTCTATTGTCCTTTTTGAAGCAAATATTTTAGCAGTTTTGTCGGAAGTTCTTTCTGCCATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACCGATCATTTGACGCATAAGTTGAAGCACCACCCTGGTCAGATTGAAGCGGCAGCAATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAACAGCCAAGAAATTGCATGAAATTGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTCAGGACTTCACCCCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCCACCAAGTCCATCGAGCGAGAGATTAATTCAGTCAACGACAACCCATTGATTGATGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCTATGGACAACACTCGGTTGGCAATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAACGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGATTTAAAGGTGCTGAAATTGCAATGGCTTCATATTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTCCAAAGTGCCGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACAGCCGAAGCCATCGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCACTCTGCCAAGCAATCGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTGAAAAGCACTGTTAGCCAAATAGCCAAGAAAGTGTTGACCACATCCTCCAATGGTGCACTTCACCCATCAAGATTTTGCGAGAAAGATCTACTTAAAGTTGTTGACAGAGAGTACACCTTTGCTTATATCGATGATCCATGCAGTGCTACTTACCCATTGAGTCAAAAGTTGAGGCAAGTTCTTGTTGAACATGCACTTGCCAACGGTGAAGGTGAAAAGAACACAGACACCTCAATCTTCCAAAAGATTATTACTTTCGAGGAGGAACTAAAAGCAGTATTACCAAAGGAGGTTGAAAATGCAAGGTTGTCATATGAGAGTGGAAATTCTAAAATTGAAAATCAAATCAAGGATTGCAGATCTTATCCATTGTATAGATTTGTGAGAGAAGAGTTGGGAACAAAATTGCTGACCGGAGAAAAAGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTGTTCACAGCTTTGTGCCAAGGCAAGATGATTGACTCCATCTTAGAGTGCTTGAAGGAATGGAATGGTGCTCCAATTCCTATTTGCAAGGAAAACCTTGAGTTCACTGATCATTTGACTCACAAGTTGAAGCATCACCCTGATCAAATTGAAGCTCCAGCAATTATGGAGCACATTTTGGAAGAAAGCTCTTACATGAAAGCAACTAAGAAATTGCATGAAATTAATCCACTCCAAAAGCCAAAACAAAATTGTTATGCTCTTCGAACTTCACCTCAATGGCTCGGTCCCTTGATTGAAGTAATTCGATTCTCCACAAAGTCTATTGAGCGAGAGATTAATTCAGTCAACGACAACCCATTGATTGATGTTTCAAGAAAAAAAGCACTACATGGAGGCAACTTCCAAGGAACACCAATTGGAGTTTCTATGGACAACACTCGGTTGGCAATTGCTTCAATTGGAAAGCTCATGTTTACCCAATTCTCAGAACTTTTCAACGATTTCTACAACAATAATGGTTTTCCTTCTAATCTTTCTGGAAGTAGAAATCCAAGCATGGATTATGAGTTTAAAGATGCTAAAATTGTCATGGCTTCATACTGTTTTGAGCTTGAATATCTTGCAAATCCAATGACAAGTCATGTCCAGAGTGTTGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAACCGCGACCCCTGGATACCGAAGGCGTCCTTGGGGTGATCTCGAAGCCATTGACATTTTGAAACTCATGTCATCCCCATTTTTGGTTGCACTATGTCAAGCAATTGACTTGAGGCACTTGGAAGAAAACTTGAAAAGCACAGTTAAAAGCATTTTGAAGCATCACCCTGGTCAAATTGAAGCTCCAGCAATTATGGAGCACATTTTGGAAGAAAGCTCTTACATGAAAGCAACTAAGAAATTGCATGAAATTAATCCACTCCAAAAGCCAAAACAAAATCGTTATGCTCTTCGAACTTCACCTCAATGGCTGGTTCAATCCATGGTGGCCACCTACCTAGGATTTAATATCCTACAAGTTTCCTTGGCAACCAAATATAGTAGGGTCAGGCGGTTGTCATGTGAGATTAGTCGTGGTGCGCGTAAGCTGGCCTAG 3198 42.84 MAPAHFQQLACQNGSIESFCISQNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGTESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIVGLLTGRPNSKAIGPNGESIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGEGEKNTDTSIFQKIITFEEELKAVLPKEVENARLSYESGNSKIENQIKDCRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPICKENLEFTDHLTHKLKHHPDQIEAPAIMEHILEESSYMKATKKLHEINPLQKPKQNCYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRKKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFTQFSELFNDFYNNNGFPSNLSGSRNPSMDYEFKDAKIVMASYCFELEYLANPMTSHVQSVEQHNQDVNSLGLISSTATPGYRRRPWGDLEAIDILKLMSSPFLVALCQAIDLRHLEENLKSTVKSILKHHPGQIEAPAIMEHILEESSYMKATKKLHEINPLQKPKQNRYALRTSPQWLVQSMVATYLGFNILQVSLATKYSRVRRLSCEISRGARKLA 1065
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13134977 13140623 + Maker00013427 Lcy1g1357 623269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1357 1065 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Lcy1g1357 1065 FunFam Phenylalanine ammonia-lyase 16 262 - -
Lcy1g1357 1065 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824(InterPro)
Lcy1g1357 1065 Gene3D - 17 262 IPR024083 -
Lcy1g1357 1065 CDD PAL-HAL 61 526 IPR001106 -
Lcy1g1357 1065 Gene3D Fumarase/aspartase (Central domain) 717 969 - -
Lcy1g1357 1065 FunFam Phenylalanine ammonia-lyase 263 564 - -
Lcy1g1357 1065 FunFam Phenylalanine ammonia-lyase 529 650 - -
Lcy1g1357 1065 Gene3D - 529 650 IPR023144 -
Lcy1g1357 1065 SUPERFAMILY L-aspartase-like 719 972 IPR008948 GO:0003824(InterPro)
Lcy1g1357 1065 Pfam Aromatic amino acid lyase 720 965 IPR001106 -
Lcy1g1357 1065 Pfam Aromatic amino acid lyase 63 539 IPR001106 -
Lcy1g1357 1065 Gene3D Fumarase/aspartase (Central domain) 970 1029 - -
Lcy1g1357 1065 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Lcy1g1357 1065 SUPERFAMILY L-aspartase-like 973 1025 IPR008948 GO:0003824(InterPro)
Lcy1g1357 1065 PANTHER HISTIDINE AMMONIA-LYASE 973 1025 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1357 1065 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1357 Lcy-Chr1:13134977 Lcy1g1359 Lcy-Chr1:13145330 0 dispersed
Lcy1g1356 Lcy-Chr1:13128327 Lcy1g1357 Lcy-Chr1:13134977 0 tandem
Lcy1g1357 Lcy-Chr1:13134977 Lcy1g1358 Lcy-Chr1:13140870 3.09E-78 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1357 K10775 - csv:101218617 1340.1