Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1358 ATGTTTGCCCAATTCTCAGAACTTGTCAACGATTTCTATAACAATAATGGTTTGCCTTCTAGTCTTTCTGCAAGTAGAAAACCAAGCATGGATTATGGGTTTAAAGGTGCTGAAATTGTCATGGCTTCATACTGTTTTGAGCTTCAATATCTTGCAAATCCAATGACAAGTCATGTCCAGAGTGTTGAGCAACACAATCAAGATGTTAACTCTCTTGGAATTGACTTGAGGCACTTGGAAGAAAACTTGAAGAGCACAGTTAAAAGCATTGTAAGCCAAGTAGCCAAGAAAGTGTTGACCACATCCTCCAATGGGCCACTTCACCCATCAAGATTTTGTGAGAAAGATCTGCTCAAAGTCGTTGATAGAGAATATACATTTGTCTACATTAACGATCCATGCAGTGCTACTTATCCATTGATGCAGAAATTGAGACAAGTTCTTGTTGGAACGACATGCACTCACCAATGGCGAAAATGA 480 39.17 MFAQFSELVNDFYNNNGLPSSLSASRKPSMDYGFKGAEIVMASYCFELQYLANPMTSHVQSVEQHNQDVNSLGIDLRHLEENLKSTVKSIVSQVAKKVLTTSSNGPLHPSRFCEKDLLKVVDREYTFVYINDPCSATYPLMQKLRQVLVGTTCTHQWRK 159
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13140870 13141434 + Maker00013190 Lcy1g1358 623270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1358 159 SUPERFAMILY L-aspartase-like 1 153 IPR008948 GO:0003824(InterPro)
Lcy1g1358 159 Coils Coil 62 82 - -
Lcy1g1358 159 Gene3D - 80 159 IPR023144 -
Lcy1g1358 159 Gene3D Fumarase/aspartase (Central domain) 1 74 - -
Lcy1g1358 159 PANTHER HISTIDINE AMMONIA-LYASE 1 73 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1358 159 Pfam Aromatic amino acid lyase 2 74 IPR001106 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1358 Lcy-Chr1:13140870 Lcy4g0292 Lcy-Chr4:3572410 3.52E-80 dispersed
Lcy1g1357 Lcy-Chr1:13134977 Lcy1g1358 Lcy-Chr1:13140870 3.09E-78 tandem
Lcy1g1358 Lcy-Chr1:13140870 Lcy1g1359 Lcy-Chr1:13145330 1.93E-80 tandem
Lcy1g1358 Lcy-Chr1:13140870 Lcy8g1916 Lcy-Chr8:45441708 5.15E-74 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1358 K10775 - csv:101222092 256.914