Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1359 ATGGCACCTGCTCACTTCCAACAACTTGCCTGCCAGAATGGTTCCATTGAGAGCTTCTGCATCAGCCAAAATGATCCACTCAACTGGGGTGTGGCCGCCGAGTCCCTCAAGGGAAGCCATCTCGATGAGGTGAAGCGCATGGTAGAGGAGTACCGGAGGCCACTCGTCAAGCTTGGAGGTGAGACCCTCACCATTTCCCAGGTGGCTGCCATTGCTACTAGGGACTCTGATGTTACTGTTGAGCTTTCTGAATCTGCTAGAGCTGGTGTTAAAGCTAGTAGCGATTGGGTTATGGAGAGCATGAACAAAGGCACCGACAGTTATGGTGTTACTACTGGATTTGGTGCTACGTCTCATCGAAGGACCAAACAGGGTGGGGCTCTTCAGAAGGAGCTCATTCGATTCTTAAATGCTGGAATTTTTGGGAGCGGGGCTGAGTCGAATCATACTTTGCCTCACTCGGCTACGAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCTGGAGACCTTGTTCCTCTTTCTTATATTGCCGGATTGCTCACTGGCCGACCAAACTCTAAGGCCATCGGGCCGAATGGAGAAAGTATTGATGCCAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTCTTTGAGTTGCAGCCTAAGGAAGGTCTTGCACTTGTGAATGGCACCGCTGTTGGTTCTGGATTGGCTTCTATTGTCCTTTTTGAAGCAAATATTTTAGCCGTTTTGTCGGAAGTTCTTTCTGCCATTTTTGCTGAGGTCATGCAAGGAAAGCCTGAATTCACCGATCATTTGACTCATAAGTTGAAGCACCACCCTGGTCAGATTGAAGCGGCAGCAATCATGGAGCACATTTTGGATGGAAGTTCCTACATGAAAACAGCCAAGAAATTGCATGAAATTGATCCTCTCCAAAAGCCCAAACAAGATCGTTATGCTCTCAGGACTTCACCCCAATGGCTTGGTCCCTTGATTGAAGTGATTCGATTCTCCACCAAGTCCATCGAGCGAGAGATTAATTCAGTCAACGACAACCCATTGATTGATGTTTCAAGAAACAAAGCACTACATGGAGGCAACTTCCAAGGAACACCGATTGGAGTTTCTATGGACAACACTCGGTTGGCAATTGCTTCAATTGGAAAGCTCATGTTTGCCCAATTCTCAGAACTTGTCAACGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCTGCAAGTAGAAATCCGAGCTTGGATTATGGGTTTAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATATCTTGCAAATCCAGTGACAAGTCATGTACAAAGTGCCGAGCAACACAATCAAGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAAACTGTCGAAGCCATCGATATTCTGAAACTCATGTCATCTACATTTTTGGTTGCACTCTGTCAAGCAATTGACTTGAGGCATTTGGAGGAAAACTTGAAGAGCACTGTGAAAAGCACGGTTAGCCAAATAGCCAAGAAAGTGTTGACCACATCCTCTAATGGTGCACTTCACCCATCAAGATTTTGTGAGAAAGATCTACTTAAAGTTGTTGACAGGGAGTACACTTTTGCTTATATCGATGATCCATGCAGTGCTACTTACCCATTGAGTCAAAAGTTGAGACAAGTTCTTGTTGAACATGCACTTGCCAACGGTGAAGGTGAAAAGAACACAGACACCTCAATCTTCCAAAAGATTATTGCTTTCGAGGAGGAACTAAAAGCAGTATTACCAAAGGAGGTTGAAAATGCAAGGTTGTCATATGAGAGTGGAAATTCTAAAATTGAAAATCAGATCAAGGATTGCAGATCTTATCCATTGTATAGATTTGTGAGAGAAGAGTTGGGAACAAAATTGCTGACCGGAGAAAAAGTGATATCTCCAGGAGAAGAGTGCGAGAAGGTGTTCACAGCTTTGTGCCAAGGCAAGATGATTGACTCCATCTTAGAGTGCTTGAAGGAATGGAATGGTGCTCCAATTCCTATCTGCTAA 2151 44.4 MAPAHFQQLACQNGSIESFCISQNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESNHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAIGPNGESIDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEVLSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTVEAIDILKLMSSTFLVALCQAIDLRHLEENLKSTVKSTVSQIAKKVLTTSSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLSQKLRQVLVEHALANGEGEKNTDTSIFQKIIAFEEELKAVLPKEVENARLSYESGNSKIENQIKDCRSYPLYRFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDSILECLKEWNGAPIPIC 716
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13145330 13147480 + Maker00013422 Lcy1g1359 623271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1359 716 NCBIfam phenylalanine ammonia-lyase 25 706 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy1g1359 716 SUPERFAMILY L-aspartase-like 25 716 IPR008948 GO:0003824(InterPro)
Lcy1g1359 716 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 198 214 IPR022313 GO:0016841(InterPro)
Lcy1g1359 716 Gene3D - 529 650 IPR023144 -
Lcy1g1359 716 FunFam Phenylalanine ammonia-lyase 16 262 - -
Lcy1g1359 716 CDD PAL-HAL 61 526 IPR001106 -
Lcy1g1359 716 Gene3D - 17 262 IPR024083 -
Lcy1g1359 716 FunFam Phenylalanine ammonia-lyase 263 564 - -
Lcy1g1359 716 Gene3D Fumarase/aspartase (Central domain) 263 711 - -
Lcy1g1359 716 Pfam Aromatic amino acid lyase 63 539 IPR001106 -
Lcy1g1359 716 PANTHER HISTIDINE AMMONIA-LYASE 22 716 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1359 716 FunFam Phenylalanine ammonia-lyase 529 650 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1355 Lcy-Chr1:13124488 Lcy1g1359 Lcy-Chr1:13145330 0 dispersed
Lcy1g1356 Lcy-Chr1:13128327 Lcy1g1359 Lcy-Chr1:13145330 0 dispersed
Lcy1g1357 Lcy-Chr1:13134977 Lcy1g1359 Lcy-Chr1:13145330 0 dispersed
Lcy1g1359 Lcy-Chr1:13145330 Lcy1g1361 Lcy-Chr1:13155015 0 dispersed
Lcy1g1358 Lcy-Chr1:13140870 Lcy1g1359 Lcy-Chr1:13145330 1.93E-80 tandem
Lcy1g1359 Lcy-Chr1:13145330 Lcy1g1360 Lcy-Chr1:13149684 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1359 K10775 - csv:101218617 1341.64