Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1360 ATGGCAGCTATTCAAAAGATTGAAGACAGCTTGTGCCATAGCCGTAACGATCCGCTCAATTGGGGGGTGGCTGCCGAGTCTCTCAAGGGAAGCCATCTTGATGAGGTGAAGCGCATGGTGGAGGAGTACCGGAGGCCTCTTGTGAAGCTTGGAGGCGAGACTCTCACCATTTCCCAAGTGGCTGCCATTGCCACTCGTGATTCTGATGTCTTGGTGGAGCTCTCTGAGTCTGCTAGAGCTGGTGTGAAAGCTAGCAGTGATTGGGTTATGGAGAGCATGAACAAGGGGACTGACAGTTATGGTGTTACTACTGGGTTTGGTGCTACATCTCATAGAAGAACCAAACAAGGTGGAGCTCTTCAAAAGGAGCTGATTAGATTCTTGAACGCTGGGATTTTTGGAAGTGGGGCTGAGTCGAGCCATACTTTGCCCCACTCGGCTACGAGGGCGGCCATGATGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCGGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCAAACTCTAAAGCTGTTGGACCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCCAACAAGCTGGTATTCCTTCTGGGTTTTTTGAATTGCAACCTAAGGAAGGCCTTGCTCTTGTTAATGGTACTGCTGTTGGTTCTGGGTTGGCTTCCATTGTTCTCTTCGAAGCCAATATTTTGGCTGTCTTGTCAGAAATTCTTTCGGCCATTTTTGCAGAAGTCATGCAAGGAAAGCCTGAATTTACTGATCATTTAACTCATAAGTTGAAGCACCATCCTGGTCAGATTGAAGCTGCTGCTATTATGGAACACATCTTAGATGGAAGTTCTTACATGAAGACTGCTAAAAAGTTGCATGAAATCGATCCTCTTCAGAAGCCAAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAATGGCTTGGTCCATTGATTGAAGTGATTCGATTCTCGACAAAGTCCATTGAGCGGGAGATTAATTCAGTCAATGACAACCCTTTGATTGATGTTTCAAGAAACAAAGCTTTGCATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTCTCTATGGACAACACTCGTTTAGCTGTTGCTTCAATTGGAAAGCTAATGTTTGCTCAATTTTCAGAGCTTGTCAATGATTTTTACAACAACGGATTGCCTTCAAATCTCTCTGCAAGCAGAAACCCAAGTTTGGATTATGGATTCAAAGGTGCTGAAATTGCCATGGCTTCCTATTGCTCTGAGCTTCAATATCTAGCAAATCCTGTAACTAGTCATGTCCAAAGTGCTGAGCAACATAACCAAGATGTCAACTCCCTTGGTTTGATCTCCTCAAGAAAAACAGCCGAGGCAATTGACATTTTGAAGCTCATGTCTTCCACATTTTTGGTTGCTCTTTGCCAAGCAATTGACTTGAGGCACTTGGAAGAGAACTTGAAGAACACAGTTAAAAATACAGTGAGCCAAGTAGCAAAAAAAGTCCTCACTACTACCTCTAATGGTGCACTCCATCCTTCAAGATTTTGCGAGAAAGATTTACTCAAAGTAGTTGACAGAGAATACACTTTCGCTTACATCGACGATCCATGCAGCGGTACTTATCCATTGATGCAGAAGTTGAGACAAGTTCTCGTGGAGCATGCTTTGAGTAATGGAGAGGATGAAAAGGACATGACCACTTCAATCTTTCAGAAGATTGGGGCCTTTGAAGAGGAATTGAAGGCCATTTTGCCCAAGGAAGTGGAAAGCGTGAGATTGACATATGAAAACGGAGATGCAACAATTAATAACCAGATTAAGGAATGTCGATCTTACCCATTATATAAGTTCGTGAGAGAAGAATTGGGAACTAAATTGCTAACTGGAGAGAAGGTTATATCTCCAGGAGAAGAGTGCGAAAAGGTTTTCACTGCATTGTGTCAAGGAAAGATGATTGACCCAATTTTGGAATGCTTGAAGGAGTGGAACGGTGCTCCAATTCCCATTTGTTGA 2127 43.54 MAAIQKIEDSLCHSRNDPLNWGVAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVLVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHSATRAAMMVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFQQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAVASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTTSNGALHPSRFCEKDLLKVVDREYTFAYIDDPCSGTYPLMQKLRQVLVEHALSNGEDEKDMTTSIFQKIGAFEEELKAILPKEVESVRLTYENGDATINNQIKECRSYPLYKFVREELGTKLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 708
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13149684 13151810 - Maker00013549 Lcy1g1360 623272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1360 708 Gene3D - 521 642 IPR023144 -
Lcy1g1360 708 CDD PAL-HAL 53 518 IPR001106 -
Lcy1g1360 708 FunFam Phenylalanine ammonia-lyase 521 642 - -
Lcy1g1360 708 Pfam Aromatic amino acid lyase 55 534 IPR001106 -
Lcy1g1360 708 NCBIfam phenylalanine ammonia-lyase 17 698 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy1g1360 708 FunFam Phenylalanine ammonia-lyase 255 561 - -
Lcy1g1360 708 FunFam Phenylalanine ammonia-lyase 8 254 - -
Lcy1g1360 708 Gene3D Fumarase/aspartase (Central domain) 255 703 - -
Lcy1g1360 708 Gene3D - 9 254 IPR024083 -
Lcy1g1360 708 SUPERFAMILY L-aspartase-like 17 708 IPR008948 GO:0003824(InterPro)
Lcy1g1360 708 PANTHER HISTIDINE AMMONIA-LYASE 14 708 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1360 708 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 190 206 IPR022313 GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy10g1753 Lcy-Chr10:41917143 Lcy1g1360 Lcy-Chr1:13149684 1.54E-299 dispersed
Lcy1g1360 Lcy-Chr1:13149684 Lcy1g1362 Lcy-Chr1:13166095 0 dispersed
Lcy1g1359 Lcy-Chr1:13145330 Lcy1g1360 Lcy-Chr1:13149684 0 tandem
Lcy1g1360 Lcy-Chr1:13149684 Lcy1g1361 Lcy-Chr1:13155015 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1360 K10775 - csv:101218382 1338.17