Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1361 ATGGCACCCATAGAGCAAACCAATGACAGTTTCTGCACAATTACTACTCATCCCGACCCACTTAACTGGGGTTTGGCTGCTGAGTCCCTCAAGGGAAGCCATCTCGACGAGGTGAAGCGCATGGTGGAGGAGTATCGGAGGCCGCTTGTCAAGCTTGGTGGTGAGACCCTCACCATTTCCCAAGTGGCTGCCATTGCTACTAGAGACTCTGATGTTACTGTTGAGCTTTCCGAGTCTGCTAGAGCTGGTGTTAAAGCTAGCAGCGATTGGGTTATGGAGAGCATGAACAAGGGGACTGATAGCTATGGTGTTACTACTGGGTTTGGTGCCACTTCTCATAGAAGGACCAAACAAGGTGGAGCTCTTCAAAAGGAGCTGATTAGATTCTTGAATGCTGGGATTTTTGGGAGTGGAGCTGAGTCGAGCCATACTTTGCCCCACTCGGCTACGAGGGCGGCCATGTTGGTGAGAATCAATACTCTTCTTCAAGGCTACTCGGGTATTAGATTTGAGATTTTGGAAGCCATAACCAAACTCTTGAACCATAACATCACTCCATGCTTGCCTCTTCGTGGAACCATTACTGCTTCAGGAGATCTTGTTCCTCTTTCTTACATTGCTGGATTGCTCACTGGTCGACCGAATTCTAAAGCTGTTGGACCAAGTGGAGAAAGTCTTGATGCAAAGGAGGCTTTTGAGCAAGCTGGTATTCCTTCTGGGTTTTTTGAGTTGCAGCCTAAAGAAGGTCTTGCTCTTGTCAACGGTACTGCCGTTGGTTCTGGATTGGCTTCTATTGTTCTCTTTGAGGCCAATATTTTGGCTGTTTTGTCCGAGATTTTGTCTGCCATTTTTGCTGAGGTTATGCAAGGTAAACCTGAATTTACTGACCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAAATTGAGGCAGCTGCAATTATGGAACATATTTTGGATGGGAGTTCTTACATGAAGACTGCTAAGAAATTGCATGAAATTGATCCTCTTCAAAAACCGAAGCAAGATCGTTATGCTCTTAGAACTTCTCCTCAGTGGCTTGGTCCATTGATTGAAGTTATTCGATTTTCAACAAAGTCTATTGAGCGAGAGATTAATTCAGTCAATGACAACCCTCTTATTGATGTTTCAAGGAACAAGGCTTTACATGGAGGCAACTTCCAAGGAACTCCGATTGGAGTTTCTATGGACAACACTCGTTTGGCTATTGCATCAATTGGAAAGCTCATGTTTGCTCAATTCTCAGAACTTGTCAATGATTTCTACAACAATGGTTTGCCTTCTAATCTTTCAGCAAGTAGAAATCCAAGCTTGGATTATGGGTTCAAAGGTGCTGAAATTGCCATGGCTTCATACTGCTCTGAGCTTCAATATCTAGCAAATCCAGTGACAAGTCATGTTCAAAGTGCTGAGCAACACAACCAGGATGTTAACTCTCTTGGTTTAATTTCTTCAAGGAAGACTGCTGAAGCCATTGACATTTTGAAGCTCATGTCTTCCACCTTTTTGGTTGCTCTATGTCAAGCAATTGACTTGAGACATTTGGAAGAAAACTTGAAGAGCGTAGTGAAGAGCACAGTAAGCCAAGTGGCCAAAAAAGTTCTCACCACAGGTGCTAACGGCGCACTTCACCCATCAAGATTCTGTGAAAAAGATTTACTGAAAGTGGTTGACAGAGAATACACCTTTGCTTATGTCGATGATGCCTGCAGTGCTACTTACCCATTGATGCAAAAATTGAGACAAGTTCTTGTTGAACATGCTTTGGAAAATGGTGAAGATGAAAAGAACACAAGCACTTCAATCTTTCAAAAGATTGGAGCTTTCGAGGAGGAATTGAAAGCCATCTTGCCCAAGGAAGTAGAAAATGCCAGGTTGTCCTATGAAAATGGAACCTCAACCATTGAAAACCAAATTAAAGAATGCAGATCTTATCCACTGTACAAGTTTGTAAGGGAAGAATTGGGAACTGGATTGCTTACCGGAGAGAAAGTCATATCTCCTGGAGAAGAGTGTGAAAAAGTATTCACAGCTCTTTGTCAAGGAAAGATGATCGACCCAATTCTTGAATGTTTGAAGGAGTGGAATGGTGCTCCAATTCCCATCTGCTAG 2133 43.23 MAPIEQTNDSFCTITTHPDPLNWGLAAESLKGSHLDEVKRMVEEYRRPLVKLGGETLTISQVAAIATRDSDVTVELSESARAGVKASSDWVMESMNKGTDSYGVTTGFGATSHRRTKQGGALQKELIRFLNAGIFGSGAESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNHNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPSGESLDAKEAFEQAGIPSGFFELQPKEGLALVNGTAVGSGLASIVLFEANILAVLSEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLMFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKSVVKSTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYVDDACSATYPLMQKLRQVLVEHALENGEDEKNTSTSIFQKIGAFEEELKAILPKEVENARLSYENGTSTIENQIKECRSYPLYKFVREELGTGLLTGEKVISPGEECEKVFTALCQGKMIDPILECLKEWNGAPIPIC 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13155015 13157147 - Maker00012611 Lcy1g1361 623273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1361 710 FunFam Phenylalanine ammonia-lyase 257 559 - -
Lcy1g1361 710 FunFam Phenylalanine ammonia-lyase 523 644 - -
Lcy1g1361 710 NCBIfam phenylalanine ammonia-lyase 19 700 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
Lcy1g1361 710 SUPERFAMILY L-aspartase-like 19 710 IPR008948 GO:0003824(InterPro)
Lcy1g1361 710 Pfam Aromatic amino acid lyase 57 532 IPR001106 -
Lcy1g1361 710 FunFam Phenylalanine ammonia-lyase 11 256 - -
Lcy1g1361 710 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 192 208 IPR022313 GO:0016841(InterPro)
Lcy1g1361 710 PANTHER HISTIDINE AMMONIA-LYASE 17 710 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1361 710 Gene3D - 11 256 IPR024083 -
Lcy1g1361 710 Gene3D Fumarase/aspartase (Central domain) 257 705 - -
Lcy1g1361 710 CDD PAL-HAL 55 520 IPR001106 -
Lcy1g1361 710 Gene3D - 523 644 IPR023144 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1359 Lcy-Chr1:13145330 Lcy1g1361 Lcy-Chr1:13155015 0 dispersed
Lcy1g1361 Lcy-Chr1:13155015 Lcy4g0293 Lcy-Chr4:3579790 0 dispersed
Lcy1g1360 Lcy-Chr1:13149684 Lcy1g1361 Lcy-Chr1:13155015 0 tandem
Lcy1g1361 Lcy-Chr1:13155015 Lcy1g1362 Lcy-Chr1:13166095 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1361 K10775 - csv:101218144 1366.29