Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1362 ATGGCGGAAACCTGCGAGCAAAACGGCCACAACAACGGCGGCGACTTCTGCATCGGCGGCCGGAATAATGACCCGTTGAACTGGGGAGTGGCAGCGGAGTCACTGAAGGGAAGCCATTTGGAGGAAGTGAAGCGGATGGTGGAGGAGTACCGGCGGCCGGTGGTGAAGCTGGGAGGAGAGACTTTGACGATAGCTCAGGTGGCTGCCATCGCCGCCCGGGAAACCGGCGTGGCGGTGGAGCTGTCGGAGTCGGCGAGAGGCGGCGTCGAGGCGAGCAGTAACTGGGTGATGGAGAGCATGAACAAAGGGACTGATAGCTACGGCGTCACCACCGGCTTCGGCGCCACCTCCCACCGCCGGACTAAAGAGGGTGGAGCTCTGCAGAGGGAGCTCATACGATTTTTGAATGCGGGAGTATTTGGAAATGGCATTGAATCAAGTCATACTTTGCCTCACTCAGCAACAAGAGCAGCCATGTTAGTTAGAATCAACACTCTCCTTCAAGGCTACTCGGGTATCAGGTTTGAGATTTTGGAAGCCATAACCAAACTTCTCAACAACAACATTACTCCATGCTTGCCTCTTCGAGGAACAATTACTGCTTCTGGAGATCTTGTTCCTCTTTCTTACATCGCTGGATTACTCACCGGTCGACCAAACTCCAAAGCTGTTGGACCAAATGGAGAAAGTCTTGATGCAAAGGAGGCTTTCAAACAAGCTGGTATTTCTTCTGGATTCTTTGAGTTGCAGCCTAAAGAAGGGTTGGCTCTTGTAAATGGAACTGCTGTTGGTTCTGGACTAGCCTCTATTGTTCTCTTTGAGGCTAATGTTTTGGCTGTTTTAGCTGAGATCTTGTCTGCTATCTTTGCTGAGGTTATGCAAGGTAAACCTGAATTTACTGATCATTTGACCCATAAGTTGAAGCACCATCCTGGTCAGATTGAGGCAGCTGCAATAATGGAACACATTTTGGATGGGAGCTCTTACATGAAAACCGCTAAGAAATTGCATGAAATCGATCCTCTTCAAAAGCCAAAACAAGATCGTTATGCCCTTAGAACTTCACCTCAATGGCTTGGTCCATTGATCGAGGTCATTAGATTTTCTACCAAGTCAATTGAGCGAGAGATTAATTCAGTCAATGATAACCCTTTGATTGATGTTTCAAGGAACAAGGCTTTACATGGAGGTAACTTCCAGGGAACGCCAATTGGAGTCTCCATGGACAACACTCGTTTGGCTATAGCTTCGATTGGTAAGCTCATTTTTGCTCAATTTTCTGAGCTTGTTAATGATTTCTACAACAATGGTTTGCCTTCAAATCTTTCTGCAAGTAGAAACCCCAGTTTGGATTATGGATTCAAAGGTGCTGAAATCGCTATGGCTTCCTATTGCTCTGAGCTTCAATATTTGGCAAATCCAGTAACAAGCCACGTCCAAAGTGCTGAGCAACATAATCAGGATGTTAACTCTCTTGGTTTAATCTCATCAAGGAAAACAGCAGAAGCCATTGACATTTTGAAACTCATGTCTTCCACATTTTTAGTTGCACTTTGCCAAGCAATTGACTTGAGGCATTTGGAAGAAAACTTGAAGAACACAGTAAAAAACACAGTAAGCCAAGTGGCCAAGAAAGTCCTTACCACCGGTGCTAATGGAGCTCTTCACCCATCTAGATTTTGTGAGAAAGATTTACTCAAAGTTGTTGACAGAGAATATACCTTTGCTTACATTGATGATCCATGCAGTGCCACTTATCCATTAATGCAGAAGTTACGACAAGTTCTAGTAGAGCACGCGCTTGGAAATGGAGAAGATGAGAAGAACACAAATAGTTCAATCTTTCAAAAGATTGGAGTTTTTGAAGAGGAACTGAAGGCTATTTTACCCAAGGAGGTAGAAAGTGCAAGGTTAGCTCATGAGAGCGGAAACTCTACTGTTCAAAATCAAATTAAGGAATGCAGATCATATCCATTGTACAAGTTTGTGAGATCAGAATTAGGAACTGAGTTGCTTACAGGAGAGAAGGTAAAATCTCCTGGAGAAGTGTGCGAGAAAGTGTTCACAGCTTTATGTCAAGGAAAGATGATCGATCCAATCTTAGAGTGTTTAAAGGAGTGGAATGGTGCTCCGATCCCCATTTGCTAA 2148 44.83 MAETCEQNGHNNGGDFCIGGRNNDPLNWGVAAESLKGSHLEEVKRMVEEYRRPVVKLGGETLTIAQVAAIAARETGVAVELSESARGGVEASSNWVMESMNKGTDSYGVTTGFGATSHRRTKEGGALQRELIRFLNAGVFGNGIESSHTLPHSATRAAMLVRINTLLQGYSGIRFEILEAITKLLNNNITPCLPLRGTITASGDLVPLSYIAGLLTGRPNSKAVGPNGESLDAKEAFKQAGISSGFFELQPKEGLALVNGTAVGSGLASIVLFEANVLAVLAEILSAIFAEVMQGKPEFTDHLTHKLKHHPGQIEAAAIMEHILDGSSYMKTAKKLHEIDPLQKPKQDRYALRTSPQWLGPLIEVIRFSTKSIEREINSVNDNPLIDVSRNKALHGGNFQGTPIGVSMDNTRLAIASIGKLIFAQFSELVNDFYNNGLPSNLSASRNPSLDYGFKGAEIAMASYCSELQYLANPVTSHVQSAEQHNQDVNSLGLISSRKTAEAIDILKLMSSTFLVALCQAIDLRHLEENLKNTVKNTVSQVAKKVLTTGANGALHPSRFCEKDLLKVVDREYTFAYIDDPCSATYPLMQKLRQVLVEHALGNGEDEKNTNSSIFQKIGVFEEELKAILPKEVESARLAHESGNSTVQNQIKECRSYPLYKFVRSELGTELLTGEKVKSPGEVCEKVFTALCQGKMIDPILECLKEWNGAPIPIC 715
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13166095 13169032 - Maker00012461 Lcy1g1362 623274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1362 715 FunFam Phenylalanine ammonia-lyase 262 567 - -
Lcy1g1362 715 FunFam Phenylalanine ammonia-lyase 528 649 - -
Lcy1g1362 715 SUPERFAMILY L-aspartase-like 24 715 IPR008948 GO:0003824(InterPro)
Lcy1g1362 715 Pfam Aromatic amino acid lyase 62 541 IPR001106 -
Lcy1g1362 715 Gene3D - 528 649 IPR023144 -
Lcy1g1362 715 ProSitePatterns Phenylalanine and histidine ammonia-lyases signature. 197 213 IPR022313 GO:0016841(InterPro)
Lcy1g1362 715 CDD PAL-HAL 60 525 IPR001106 -
Lcy1g1362 715 Gene3D Fumarase/aspartase (Central domain) 262 710 - -
Lcy1g1362 715 Gene3D - 17 261 IPR024083 -
Lcy1g1362 715 PANTHER HISTIDINE AMMONIA-LYASE 23 715 IPR001106 GO:0016841(PANTHER)|GO:0045548(PANTHER)
Lcy1g1362 715 FunFam Phenylalanine ammonia-lyase 18 261 - -
Lcy1g1362 715 NCBIfam phenylalanine ammonia-lyase 24 705 IPR005922 GO:0005737(InterPro)|GO:0006559(InterPro)|GO:0016841(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1360 Lcy-Chr1:13149684 Lcy1g1362 Lcy-Chr1:13166095 0 dispersed
Lcy1g1362 Lcy-Chr1:13166095 Lcy4g0292 Lcy-Chr4:3572410 0 dispersed
Lcy1g1361 Lcy-Chr1:13155015 Lcy1g1362 Lcy-Chr1:13166095 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1362 K10775 - csv:101217907 1321.22