Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1365 ATGGCTGCTTCTCGTAGATGGAGATCAGTCACAGTCAGATTCCAAGAGGAGGAGCTCGAAAGCGGAGAAGAAGAATCGTGGAGAGTGTTTCCGGAGGATTACGACGATGGAATGGTGTTGGATCCAAGGATGGCGATATTGAACAGATGGAACAGGGTTTTTCTGGTGGCTTGTTTGGTGTCGCTGTTCGTGGACCCGGTGTTCTTCTTTCTGCCGGTGGTGAAGGCGGAGGAGGGGTGCGTGGAAATGGGCGGAGGGCTCGCGGTGGCGCTGACGGTGGTGCGGTCGGCGGGGGATGCGTTCTACATAACGCAGATTCTGGTGAGGTTTAGGACGGCTTACGTGGCTCCGTCGTCGAGGATCTTTGGGAAAGGGGAGCTCGTCATTGATCCTTCCAAGATTGCTGCTAATTATCTTGTTTTCCACTTTTGGCTTGATTTTGCTGCTGCATTGCCACTTCCTCAGGCATTCATATGGGTAGCAATCCCAAACATCAGGGGTTCAAACATGACCCCATGGTGTTACTTCCTTCGCTTCTCCATCCTCTTCCAATACCTCTTGAGGCTCTATCTCATCTTCCCTTTATGTGACCAAATCATTAATGCCACTGGAGTTTTGATGAAAACAGCATGGGCTGGAGCTGTTTATAATCTAATGCTCTTTATGCTAGCAAGCCACGTTTTGGGTTCGTGTTGGTACCTGTTATCCATTGGACGACAAATGGAATGTTGGAAAAAGGTTTGCCATTTGGGGCACTTGGATTGTCAATATGAGTTTTTTGATTGTAAAGCTGTGGGAAATCCAAATAGAGCTGCTTGGTTTGAAGCAAGCAATATCTCAAATCTTTGCCATCCAACTGCCACCACTTTCTTCCATTTTGGGATCTTTTCTGATTCTTTTGCCTCCACTTCTTCCACCTTCTTCAGTAGGTACTTCTATTGCTTTTGGTGGGGCTTGAGGAATTTAAGCTCTTTGGGACAAAATTTGCTGACGAGTAGCAACGTGGCGGAAATCAACTTCGCGATTGTGATAGCGATCGTGGGATTGGTGCTTTTCGCACTTCTAATCGGAAATATGCAAGTAATTGATTATAGGAAAAAACTTGGCTGTATACTAACTTATCTTCAATCGACAACTTTGAGGCTGGAAGAGTGGAGGGTGAGGAGAACGGACACAGAGCGATGGATGCACCACAGGCAGCTGCCGTATGAGCTGAAGGAAAGCGTTAGGAAATACGACCAATTCAGATGGATTGCGACTCGTGGGGTTGATGAAGAAGACATTCTTAAAGGCCTTCCTATGGACCTTAGACGAGACATCAAACGCCATCTTTGCCTCGACCTCGTTCGTCAGGTGCCACTGTTCAACGAGATGGAGGAGAGAATGTTGGACGCAATATGCGAAAGATTGAGACCCTGTTTAAGCACGTCCAACACCTGCTTGGTCCGCGAAGGCGACCCAGTCAACGAGATGCTCTTTATTATCCGCGGCCATCTCGACTCCCACACCACCAACGGCGGCCGCACCGGCTTCTTCAACTCCAGCCGCCTCGGCCCCACCGACTTCTGCGGCGAGGAGCTTCTCCCCTGGGCACTCGACCCCCGCCCCGCCGCCGTCCTCCCCTCCTCCACTCGCACCGTCAAGGCCATCACCGAAGTCGAGGCCTTCGCCCTCATCGCCGACGACCTCAAGTTCGTCGCCGCCCAGTTCCGCCGCCTCCACAGCAAGCAGCTCAGGTACACTTTCAGGTTCCACTCCCACCAGTGGCGGACCTGGGCCGCCTGTTTTATTCAGGCCGCGTGGTTCAGCTACAAGCGGCGGAAGGAGGCGGCGGAGGTGAAGAAGGAGATTGTTGTTGGAAGGAAGTATGCGGCCAATTGTAGGAGGGTTGTCGGCCGTGGTGGGAGTGGGCGGCGTTGCGATGGTGGTGAGATGAATGCCGTTCATGGGTCGCTGTTGAAGCCTATTGAACCTGACTTCTCGGTTGAAGAAAGATGA 1998 51.55 MAASRRWRSVTVRFQEEELESGEEESWRVFPEDYDDGMVLDPRMAILNRWNRVFLVACLVSLFVDPVFFFLPVVKAEEGCVEMGGGLAVALTVVRSAGDAFYITQILVRFRTAYVAPSSRIFGKGELVIDPSKIAANYLVFHFWLDFAAALPLPQAFIWVAIPNIRGSNMTPWCYFLRFSILFQYLLRLYLIFPLCDQIINATGVLMKTAWAGAVYNLMLFMLASHVLGSCWYLLSIGRQMECWKKVCHLGHLDCQYEFFDCKAVGNPNRAAWFEASNISNLCHPTATTFFHFGIFSDSFASTSSTFFSRYFYCFWWGLRNLSSLGQNLLTSSNVAEINFAIVIAIVGLVLFALLIGNMQVIDYRKKLGCILTYLQSTTLRLEEWRVRRTDTERWMHHRQLPYELKESVRKYDQFRWIATRGVDEEDILKGLPMDLRRDIKRHLCLDLVRQVPLFNEMEERMLDAICERLRPCLSTSNTCLVREGDPVNEMLFIIRGHLDSHTTNGGRTGFFNSSRLGPTDFCGEELLPWALDPRPAAVLPSSTRTVKAITEVEAFALIADDLKFVAAQFRRLHSKQLRYTFRFHSHQWRTWAACFIQAAWFSYKRRKEAAEVKKEIVVGRKYAANCRRVVGRGGSGRRCDGGEMNAVHGSLLKPIEPDFSVEER 665
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13200281 13204552 + Maker00012862 Lcy1g1365 623277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1365 665 Gene3D - 54 362 - -
Lcy1g1365 665 Pfam Ion transport protein 52 360 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1365 665 SUPERFAMILY Voltage-gated potassium channels 49 360 - -
Lcy1g1365 665 SMART cnmp_10 454 585 IPR000595 -
Lcy1g1365 665 CDD CAP_ED 454 585 IPR000595 -
Lcy1g1365 665 Gene3D Helix hairpin bin 364 445 - -
Lcy1g1365 665 Gene3D Jelly Rolls 452 572 IPR014710 -
Lcy1g1365 665 FunFam Cyclic nucleotide-gated ion channel 1 452 570 - -
Lcy1g1365 665 ProSiteProfiles cAMP/cGMP binding motif profile. 454 539 IPR000595 -
Lcy1g1365 665 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 26 615 - -
Lcy1g1365 665 FunFam Cyclic nucleotide-gated ion channel 1 381 445 - -
Lcy1g1365 665 SUPERFAMILY cAMP-binding domain-like 384 577 IPR018490 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1365 Lcy-Chr1:13200281 Lcy9g1763 Lcy-Chr9:42827391 7.56E-226 dispersed
Lcy1g1365 Lcy-Chr1:13200281 Lcy8g1911 Lcy-Chr8:45376747 1.37E-296 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1365 K05391 - csv:101221856 896.345