Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1368 ATGATTACGTTTATGGATTCGAAAGAGAAATTGAAGGAGATGGAGAAATGTTTAGATCCTCAGCTATGGCATGCCTGTGCTGGAGGAATGGTTCAAATGCCGCCGGTGAACGCCAGGGTTTTCTATTTTCCTCAAGGCCATGCCGAGCATGCGTGTGCGCCAGTTGATTTCAGGAGCTGTCCCAAGGTTCCTCCGTATACCCTTTGCAGAGTTTCTGCCATCAAGTTCCTTGCCGATCCTGACACGGATGAGGTCTTTGCCAAAGTTAGGTTGATTCCCATAAATGGAAGTGAACTAGATTTTGAAGATGATGGAATTGGGAGGCTTAATGGGTCTGAACAGGATAAGCCAACTTCTTTTGCAAAGACACTGACTCAGTCTGATGCTAACAATGGTGGGGGTTTCTCTGTTCCGAGGTATTGTGCAGAAACAATCTTCCCTCGGTTGGATTATTCTGCTGATCCGCCTGTTCAGACGATTCTTGCTAAGGATGTTCATGGTGAGACATGGAAATTTAGGCACATTTACAGGGGTACGCCTCGGCGGCATCTTTTGACCACTGGGTGGAGTACTTTTGTTAATCATAAGAAGCTTGTTGCGGGTGATTCCATTGTTTTCTTGAGGGCAGAGAATGGAGATCTCTGCGTCGGGATTAGACGGGCGAAGAGGGGAATTGGAGATGGACTGGAGTCGACCAGTGGATGGAATCCAGCAGGTGGGAACTGTGCTGTCCCGTATGGAGCGTTCTCATCGTTTTTGAGGGAAGATGAAAACAGACTGACGAGGTCAGCTAATGGCTTGAATGGAAATGGAAGTCTTTTGGGAAAGGGGAAAGTGAAGCCTGAATCAGTTATTGAAGCTGCTACACTTGCTTCAAATGGGCAGCCCTTTGAAATAGTATACTACCCTAGAGCTAGTACTCCTGAGTTCTGCGTCAAGGCAGGACTGGTGAAAGCAGCATTGCAGATCCGGTGGTGCTCGGGTATGAGGTTCAAGATGGCCTTTGAAACTGAGGACTCTTCACGGATAAGCTGGTTCATGGGTACCATTAACTCGGTTCAGGTCGCTGACCCACTTCGCTGGCCTGAATCACCATGGAGGCTTCTACAGGTTACTTGGGATGAACCAGATTTACTTCAGAATGTGAAACGCGTTAGCCCATGGTTGGTCGAATTGGTATCGAACATGTCTCCTATTCACCTTGCCCCCTTCTCACCTCCGAGGAAAAAGTTCAGATATCCACAACACCCTGATTTCCCCCTCGATAACCAGCCTTCTATGCCATCGTTCTCTAGTTATCTCCATGGGCCCGGCAGCCCCTTCGGTTGTCCTCCCGACAACAACCCTGCTGGCATGCAGGGAGCCAGGCATGCTCATTTTGGTCTATCCTTGTCAGATTTCCATCTCAGTAAACTGCAGTCAGGTCTGTTTCCAATTGGTTATCGATCACTGGATCCAACTGCTGGATCAACTAGACTTTCTGGTAATACAATGACTGAAAAACCAAGTATGAGTGAAAATGTATCTTGCTTGCTAACCATGGCACATTCTACTCAAGCGTCGAAGAAATTTGACGACGTAAAGACTCCCCAGCTAATACTTTTTGGCCGACCCATACTCACAGAATTGCAGATGTCTCAAAGCTGCTCTGGTGATACTGTTTCTCCGGTTGGTACTGGAAATAGTTCGTCAGATGGCAACGGAGATAAAATGGCAAATTTCTCTGATGGTTCTGGATCTGCTCTGCATCAACAAGGCCTACCAGAACGCTCGTCTTGCGAAAATTTCCAATGGTACAAGGACAATCGCCAAGATGTCGAGCCTAACTTGGATACTGGCCACTGTAAAGTCTTTATGGAATCAGAAGATGTAGGTCGCACCCTTGATCTTTCTTCACTTGGGTCTTATGAAGAATTGTATAGAAAACTTGGAAATATGTTTGGTATAGATAATTCAGAGACATTGAACCATGTCTTGTACCGCGATGTTTCCGGTGCTGTCAAGCATGTCGGTGACGAACAATTCAGTGACTTCATCAAGACAGCAAGAAGATTGACTATTCTAACAGATTCAGGAAGTAACAATGTAGGAGCTTAG 2097 46.45 MITFMDSKEKLKEMEKCLDPQLWHACAGGMVQMPPVNARVFYFPQGHAEHACAPVDFRSCPKVPPYTLCRVSAIKFLADPDTDEVFAKVRLIPINGSELDFEDDGIGRLNGSEQDKPTSFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFLRAENGDLCVGIRRAKRGIGDGLESTSGWNPAGGNCAVPYGAFSSFLREDENRLTRSANGLNGNGSLLGKGKVKPESVIEAATLASNGQPFEIVYYPRASTPEFCVKAGLVKAALQIRWCSGMRFKMAFETEDSSRISWFMGTINSVQVADPLRWPESPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNMSPIHLAPFSPPRKKFRYPQHPDFPLDNQPSMPSFSSYLHGPGSPFGCPPDNNPAGMQGARHAHFGLSLSDFHLSKLQSGLFPIGYRSLDPTAGSTRLSGNTMTEKPSMSENVSCLLTMAHSTQASKKFDDVKTPQLILFGRPILTELQMSQSCSGDTVSPVGTGNSSSDGNGDKMANFSDGSGSALHQQGLPERSSCENFQWYKDNRQDVEPNLDTGHCKVFMESEDVGRTLDLSSLGSYEELYRKLGNMFGIDNSETLNHVLYRDVSGAVKHVGDEQFSDFIKTARRLTILTDSGSNNVGA 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13243000 13246311 + Maker00012720 Lcy1g1368 623280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1368 698 Pfam Auxin response factor 287 370 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy1g1368 698 Gene3D - 610 696 - -
Lcy1g1368 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 694 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lcy1g1368 698 FunFam Auxin response factor 118 222 - -
Lcy1g1368 698 MobiDBLite consensus disorder prediction 546 586 - -
Lcy1g1368 698 FunFam Auxin response factor 325 398 - -
Lcy1g1368 698 Gene3D - 118 222 IPR015300 -
Lcy1g1368 698 CDD B3_DNA 119 220 IPR003340 GO:0003677(InterPro)
Lcy1g1368 698 ProSiteProfiles B3 DNA-binding domain profile. 120 222 IPR003340 GO:0003677(InterPro)
Lcy1g1368 698 SUPERFAMILY DNA-binding pseudobarrel domain 114 224 IPR015300 -
Lcy1g1368 698 Pfam B3 DNA binding domain 120 221 IPR003340 GO:0003677(InterPro)
Lcy1g1368 698 Gene3D - 324 398 - -
Lcy1g1368 698 ProSiteProfiles PB1 domain profile. 612 692 IPR053793 -
Lcy1g1368 698 SMART B3_2 120 222 IPR003340 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy13g1587 Lcy-Chr13:34745385 Lcy1g1368 Lcy-Chr1:13243000 8.41E-109 dispersed
Lcy1g1368 Lcy-Chr1:13243000 Lcy4g1586 Lcy-Chr4:39949846 4.51E-78 dispersed
Lcy1g1368 Lcy-Chr1:13243000 Lcy10g1758 Lcy-Chr10:41995200 8.73E-274 wgd
Lcy1g1368 Lcy-Chr1:13243000 Lcy8g1907 Lcy-Chr8:45332279 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
19608 None None None None Lcy TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1368 K14486 - csv:101217039 1342.02