Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1371 ATGTCTAACAATGTTAATGGCGGGTCGGCGGCCAAGGATTACCAAGACCCACCTCCAGCCCCATTGATCGACGCTGAGGAGTTCATTCAGTGGTCATTTTACAGAGCCATCATCGCCGAGTTCGTTGCCACGCTTCTGTTCTTGTACATTCTCGTTCTCACTGTGATTGGCGCTTCTAATCAGTCCGAAACCGGGAAATGCGGCGGCGTCGGCGCTTTGGGCATTGCCTGGGCAGTCGGCGGCATGATCTTCGTCCTCGTTTACTGCACCGCTGGAATTTCTGGAGGGCATATTAACCCGGCGGTGACGTTCGGGCTGTTATTGGCTCGAAAAATCTCTGTAATCAGAGCTGTGTTTTACATTGTGGCTCAATGTTTGGGCGCCATTTGTGGGTGTGCGTTGGCTAAATCATTTCAGAAGGCTTTCTACGTTCGGTTCGGCGGTGGAGCCAATACGCTCCATGAAGGGTACAGCATCGGCACCGGCTTAGCCGCAGAGATCATCGGAACTTTTGTTCTTGTTTACACTGTCTTCTCCGCCACCGATCCCAAGAGAAACGCCAGAGATTCTCATGTCCCTGTGTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTCGTGGTTCATTTGGCCACCATTCCGATCACCGGCACCGGCATAAACCCAGCTCGAAGCTTAGGAGCTGCAGTGATCTTTAACAAAGCTGCGGCCTGGGATCATCATTGGATCTTTTGGGTTGGGCCCTTCGTCGGAGCTGCAATTGCTGCAATTTATCATCAAGTCGTAATAAGGGCAGGGGCAGTTAAAGCTCTGGGATCGTTCAGAAGTTCCTCCGCCGTATAA 840 52.38 MSNNVNGGSAAKDYQDPPPAPLIDAEEFIQWSFYRAIIAEFVATLLFLYILVLTVIGASNQSETGKCGGVGALGIAWAVGGMIFVLVYCTAGISGGHINPAVTFGLLLARKISVIRAVFYIVAQCLGAICGCALAKSFQKAFYVRFGGGANTLHEGYSIGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFVVHLATIPITGTGINPARSLGAAVIFNKAAAWDHHWIFWVGPFVGAAIAAIYHQVVIRAGAVKALGSFRSSSAV 279
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13291759 13293978 - Maker00013348 Lcy1g1371 623283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1371 279 PRINTS Major intrinsic protein family signature 116 135 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 PRINTS Major intrinsic protein family signature 201 223 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 PRINTS Major intrinsic protein family signature 35 54 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 PRINTS Major intrinsic protein family signature 165 183 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 PRINTS Major intrinsic protein family signature 241 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 PRINTS Major intrinsic protein family signature 79 103 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 FunFam Probable aquaporin PIP1-2 20 277 - -
Lcy1g1371 279 Pfam Major intrinsic protein 29 258 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 8 275 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lcy1g1371 279 ProSitePatterns MIP family signature. 97 105 IPR022357 -
Lcy1g1371 279 Gene3D Glycerol uptake facilitator protein. 20 279 IPR023271 -
Lcy1g1371 279 NCBIfam MIP family channel protein 39 257 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1371 279 SUPERFAMILY Aquaporin-like 27 263 IPR023271 -
Lcy1g1371 279 CDD MIP 35 261 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1371 Lcy-Chr1:13291759 Lcy1g1374 Lcy-Chr1:13303493 2.95E-167 dispersed
Lcy1g1371 Lcy-Chr1:13291759 Lcy1g1372 Lcy-Chr1:13296493 2.08E-167 tandem
Lcy1g1371 Lcy-Chr1:13291759 Lcy10g1764 Lcy-Chr10:42030570 1.91E-152 wgd
Lcy1g1371 Lcy-Chr1:13291759 Lcy8g1900 Lcy-Chr8:45259851 6.38E-155 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1371 K09872 - csv:101215604 477.633