Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1372 ATGTCGAAGGATCTTGAAGCCGGTGGGTTCGCCGCCAAGGACTACCAAGACCCACCTCCAGCCCCATTGATCGACGCCCAGGAGTTCGCTCAATGGTCTTTTTACAGAGCCATCATCGCCGAGTTCGTCGCCACGCTTTTGTTCTTGTACGTCACTGTTCTCACCGTCATTGGCTACAGCAGCCAGTCCGACACCAAAAACGGCGGCCAAATCTGCGGCGGCGTCGGCATTCTCGGCATTGCTTGGGCATTCGGCGGCATGATCTTCGTTCTTGTTTACTGCACCGCTGGAATTTCCGGAGGGCATATTAACCCGGCGGTGACTTTTGGGTTGTTTTTGGCTCGGAAAGTGTCCCTAGTTCGAGCAGTTCTTTACATGGCGGCTCAATGTTTGGGCGCCATTTGTGGATGTGCATTGGTGAAATCGTTCCAAAAGGCTCATTACAATCAGTATGGCGGTGGAGCTAATTCGCTCGCTGATGGGTACAGCACCGGCACCGGCTTGGCCGCCGAGATCATCGGAACTTTCGTTCTTGTTTACACTGTCTTCTCCGCCACCGATCCCAAGAGGAACGCTAGAGATTCTCACGTCCCTGTTTTGGCGCCACTCCCAATTGGGTTCGCGGTGTTTATGGTTCATTTGGCCACCATTCCGATCACTGGCACTGGCATTAACCCAGCTCGAAGCTTTGGAGCTGCTGTGATCTTTAACAAAGACAAGCCCTGGGATGACCAGTGGATCTTTTGGGTTGGGCCCTTCATTGGAGCTGCCATTGCTGCAATCTATCACCAAATCATATTGAGGGCTGGCGCAGTTAAAGCTCTGGGATCGTTCAGAAGCTCCACCGCCGTATAA 855 53.1 MSKDLEAGGFAAKDYQDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYSSQSDTKNGGQICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAVLYMAAQCLGAICGCALVKSFQKAHYNQYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNKDKPWDDQWIFWVGPFIGAAIAAIYHQIILRAGAVKALGSFRSSTAV 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13296493 13297900 - Maker00012934 Lcy1g1372 623284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1372 284 CDD MIP 36 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 PRINTS Major intrinsic protein family signature 206 228 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 PRINTS Major intrinsic protein family signature 84 108 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 PRINTS Major intrinsic protein family signature 121 140 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 PRINTS Major intrinsic protein family signature 246 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 PRINTS Major intrinsic protein family signature 170 188 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 PRINTS Major intrinsic protein family signature 36 55 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 Pfam Major intrinsic protein 29 263 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 SUPERFAMILY Aquaporin-like 28 268 IPR023271 -
Lcy1g1372 284 ProSitePatterns MIP family signature. 102 110 IPR022357 -
Lcy1g1372 284 FunFam Probable aquaporin PIP1-2 21 282 - -
Lcy1g1372 284 Gene3D Glycerol uptake facilitator protein. 21 284 IPR023271 -
Lcy1g1372 284 NCBIfam MIP family channel protein 40 262 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1372 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 280 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1372 Lcy-Chr1:13296493 Lcy1g1374 Lcy-Chr1:13303493 6.06E-207 dispersed
Lcy1g1371 Lcy-Chr1:13291759 Lcy1g1372 Lcy-Chr1:13296493 2.08E-167 tandem
Lcy1g1372 Lcy-Chr1:13296493 Lcy1g1373 Lcy-Chr1:13300270 3.04E-191 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1372 K09872 - csv:101215366 540.036