Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lcy1g1373 ATGTCGAAGGATCTTGAAGCCGGAGGGCGTGGTGGGTTCAGCGGCAAGGACTACGAAGACCCGCCCCCAGCCCCATTGATCGACGCGCAGGAGTTCGCTCAGTGGTCCTTTTACAGAGCCATTATAGCCGAGTTCGTTGCTACCCTTTTGTTCTTGTATGTCACTGTTCTCACTGTCATTGGATATCAGCTTCAGAGCGATGATAAGAATGGAGGTCACATTTGCGGCGGCGTCGGCATTTTGGGCATCGCCTGGGCCTTCGGTGGCATGATTTTTGTTCTTGTTTATTGCACCGCCGGAATTTCTGGGGGGCATATAAATCCGGCGGTGACGTTTGGGCTGTTTTTGGCACGGAAGGTGTCGTTGGTGCGAGCTATATTGTACATGGCGGCTCAGAGTTTGGGCGCCATTTGTGGCTGTGCGTTGGTGAAAGCTTTCCAGAACGCTCACTACACGGAGTACGGCGGTGGAGCCAATTCGCTGGCCGACGGCTACAGTACCGGCACCGGATTGGCTGCCGAGATCATCGGAACCTTCGTTCTGGTTTACACTGTGTTTTCGGCTACCGACCCCAAGAGAAATGCCAGAGATTCCCATGTCCCTGTTTTGGCGCCACTCCCAATCGGGTTCGCGGTGTTCATGGTTCACTTGGCCACAATTCCGATCACCGGCACAGGCATCAACCCAGCTAGAAGCTTTGGAGCTGCAGTGGTCTTCAACAAATCCAAGCCATGGGATGATCAATGGATCTTTTGGGTTGGACCATTCATTGGCGCTGCCATTGCTGCAATCTATCACCAATTCATATTAAGAGCAGGAGCAGCCAAAGCTCTTGGATCATTCGCAAGCTCTTGA 855 52.98 MSKDLEAGGRGGFSGKDYEDPPPAPLIDAQEFAQWSFYRAIIAEFVATLLFLYVTVLTVIGYQLQSDDKNGGHICGGVGILGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVSLVRAILYMAAQSLGAICGCALVKAFQNAHYTEYGGGANSLADGYSTGTGLAAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVVFNKSKPWDDQWIFWVGPFIGAAIAAIYHQFILRAGAAKALGSFASS 284
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
1 13300270 13301674 - Maker00012192 Lcy1g1373 623285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lcy1g1373 284 FunFam Probable aquaporin PIP1-2 24 284 - -
Lcy1g1373 284 PRINTS Major intrinsic protein family signature 87 111 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 PRINTS Major intrinsic protein family signature 249 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 PRINTS Major intrinsic protein family signature 209 231 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 PRINTS Major intrinsic protein family signature 124 143 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 PRINTS Major intrinsic protein family signature 173 191 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 NCBIfam MIP family channel protein 43 265 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 MobiDBLite consensus disorder prediction 1 22 - -
Lcy1g1373 284 Pfam Major intrinsic protein 32 266 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 Gene3D Glycerol uptake facilitator protein. 24 284 IPR023271 -
Lcy1g1373 284 SUPERFAMILY Aquaporin-like 31 271 IPR023271 -
Lcy1g1373 284 CDD MIP 39 269 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Lcy1g1373 284 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 6 281 IPR034294 GO:0005886(PANTHER)|GO:0015250(PANTHER)
Lcy1g1373 284 ProSitePatterns MIP family signature. 105 113 IPR022357 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lcy1g1373 Lcy-Chr1:13300270 Lcy1g1375 Lcy-Chr1:13308805 6.51E-202 dispersed
Lcy1g1372 Lcy-Chr1:13296493 Lcy1g1373 Lcy-Chr1:13300270 3.04E-191 tandem
Lcy1g1373 Lcy-Chr1:13300270 Lcy1g1374 Lcy-Chr1:13303493 7.16E-190 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lcy1g1373 K09872 - csv:101216085 536.954